1. Guided extraction of genome-scale metabolic models for the integration and analysis of omics dataAndrew Walakira, Damjana Rozman, Tadeja Režen, Miha Mraz, Miha Moškon, 2021, original scientific article Keywords: genome-scale metabolic model, model extraction methods, context-specific metabolic model, omics data integration, subsystem enrichment analysis, model interpretability
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2. Genetic characterization of Genista sericea Wulfen (Cytiseae - Fabaceae) as revealed by nuclear DNA content and ITS nrDNA region analysisLiliana Vižintin, Vera Kosovel, Laura Feoli Chiapella, Borut Bohanec, 2012, original scientific article Keywords: metuljnice, genetske lastnosti, genista sericea, morfološka variabilnost, genetska variabilnost, phylogenic analysis, internal transcribed spacer, fabaceae, genome size, fabaceae, morphological variability, genetic variability
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3. A molecular survey and phylogenetic analysis of porcine circovirus type 3 using oral fluid, faeces and serumJan Plut, Urška Jamnikar Ciglenečki, Irena Golinar, Tanja Knific, Marina Štukelj, 2020, original scientific article Keywords: viral disease, pig oral fluid, faeces, serum, PCV3, PCR, first report, Slovenia, Circoviridae infections - virology - veterinary, polymerse chain reaction - methods, phylogeny, genome viral - genetics, sequence analysis, DNA, swine
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4. Beer spoiling mechanisms of Lactobacillus brevisMateja Govže, 2017, master's thesis Keywords: beer, hop, Humulus lupulus, beer spoilage, lactic acid bacteria, Lactobacillus brevis, genome, genome sequencing, genome analysis, RNA sequencing, transcriptomic analysis, gene expression analysis, fenotypic analysis
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5. Novakomyces olei sp. nov., the first member of a novel Taphrinomycotina lineageNeža Čadež, Dénes Dlauchy, Miha Tome, Gábor Péter, 2021, original scientific article Keywords: genome sequence, phylogenomics, functional gene analysis, novel yeast species, novel class, olive oil
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6. Integration of omics data to generate and analyse COVID-19 specific genome-scale metabolic modelsTadeja Režen, Alexandre Martins, Miha Mraz, Nikolaj Zimic, Damjana Rozman, Miha Moškon, 2022, original scientific article Keywords: COVID-19, genome-scale metabolic models, model extraction methods, context-specific models, metabolic enrichment analysis
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7. Integrative computational modeling to unravel novel potential biomarkers in hepatocellular carcinomaAndrew Walakira, Cene Skubic, Nejc Nadižar, Damjana Rozman, Tadeja Režen, Miha Mraz, Miha Moškon, 2023, original scientific article Keywords: hepatocellular carcinoma, meta-analysis, genome-scale metabolic modeling, network analysis, enriched pathways, enriched reactions, enriched subsystems
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