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1. The integrative knowledge base for miRNA-mRNA expression in colorectal cancer
Daša Jevšinek Skok, Nina Hauptman, Emanuela Boštjančič, Nina Zidar, 2019, original scientific article

Keywords: web aplication, RNA expression, colorectal cancer, gene expression, knowledge base, cancer genome atlas, miRNA, mRNA, gene correlation, target genes
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2. Identification and validation of new cancer stem cell-related genes and their regulatory microRNAs in colorectal cancerogenesis
Kristian Urh, Margareta Žlajpah, Nina Zidar, Emanuela Boštjančič, 2021, original scientific article

Keywords: colorectal cancer, differentially expressed genes, cancer stem cells, qPCR
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3. Tumour budding and poorly differentiated clusters in colon cancer – different manifestations of partial epithelial–mesenchymal transition
Ana Pavlič, Emanuela Boštjančič, Rajko Kavalar, Bojan Ilijevec, Serena Bonin, Fabrizio Zanconati, Nina Zidar, 2022, original scientific article

Keywords: colon cancer, colorectal cancer, epitheliall–mesenchymal transition, miRNA, partial epithelial–mesenchymal transition, poorly differentiated clusters, tumour budding
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4. Predictive modeling of colorectal cancer using exhaustive analysis of microbiome information layers available from public metagenomic data
Boštjan Murovec, Leon Deutsch, Blaž Stres, 2024, original scientific article

Keywords: gut microbiome, machine learning, colorectal cancer, colorectal adenoma, metagenomics, functional microbiome
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