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1. No room for males in caves
Ester Premate, Špela Borko, Simona Kralj-Fišer, Michael Jennions, Žiga Fišer, Gergely Balázs, Anna Bíró, Gregor Bračko, Denis Copilaş-Ciocianu, Nuša Hrga, Gábor Herczeg, Behare Rexhepi, Maja Zagmajster, Valerija Zakšek, Lutz Fromhage, Cene Fišer, 2021, original scientific article

Keywords: caves, extreme habitats, sex allocation theory
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2. Generation of genome-wide SNP markers from minimally invasive sampling in endangered animals and applications in species ecology and conservation
Hans Recknagel, Luka Močivnik, Valerija Zakšek, Yonglun Luo, Rok Kostanjšek, Peter Trontelj, 2024, original scientific article

Keywords: amphibians, conservation genetics, environmental DNA, genomics, proteomics, microbial biology, empirical population genetics
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3. Morphologically cryptic amphipod species are ˝ecological clones˝ at regional but not at local scale
Žiga Fišer, Valerija Zakšek, Cene Fišer, Florian Altermatt, Tea Knapič, 2015, original scientific article

Keywords: habitats, community ecology
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4. Redescription of two subterranean amphipods Niphargus molnari Méhely, 1927 and Niphargus gebhardti Schellenberg, 1934 (Amphipoda, Niphargidae) and their phylogenetic position
Valerija Zakšek, Cene Fišer, Dorottya Angyal, Gergely Balázs, Virág Krízsik, 2015, original scientific article

Keywords: redescription, morphology, phylogeny, endemism, SEM, Niphargus
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5. A molecular test for cryptic diversity in ground water: how large are the ranges of macro-stygobionts?
Peter Trontelj, Cristophe J. Douady, Cene Fišer, Janine Gibert, Špela Gorički, Tristan Lefébure, Boris Sket, Valerija Zakšek, 2009, original scientific article

Keywords: caves, cryptic species, Niphargus, phylogeography, subterranean
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6. Age estimates for some subterranean taxa and lineages in the Dinaric Karst
Peter Trontelj, Špela Gorički, Slavko Polak, Rudi Verovnik, Valerija Zakšek, Boris Sket, 2007, original scientific article

Keywords: speleobiologija, molekularna ura, molekularna filogenija, filogeografija, Dinarski kras, spelobiologija, molecular clock, molecular phylogeny, phylogeography, Dinaric Karst
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7. New records and unusual morphology of the cave hydrozoan Velkovrhia enigmatica Matjašič & Sket, 1971 (Cnidaria: Hydrozoa: Bougainvilliidae)
Maja Zagmajster, Teo Delić, Simona Prevorčnik, Valerija Zakšek, 2013, original scientific article

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8. Subterranean fauna of twelve Istrian caves
Slavko Polak, Jana Bedek, Roman Ozimec, Valerija Zakšek, 2012, original scientific article

Keywords: troglobionti, podzemeljsko živalstvo, kraške jame, varstvo, Istra, subterranean fauna, troglobionts, cave conservation
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9. Znotrajvrstna raznolikost istrske slepe postranice Niphargus krameri
Žiga Fišer, 2011, undergraduate thesis

Keywords: postranice, filogenija, filogeografija, taksonomija
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10. Vpliv poledenitve na filogeografsko strukturo slepe postranice Niphargus stygius
Teo Delić, 2012, undergraduate thesis

Keywords: Niphargus stygius, pleistocen, filogeografija, koalescenca, znotrajvrstna raznolikost
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