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1. Genome-wide transcriptomic analysis reveals insights into the response to Citrus bark cracking viroid (CBCVd) in hop (Humulus lupulus L.)
Ajay Kumar Mishra, Atul Kumar, Deepti Mishra, Vishnu Sukumari Nath, Jernej Jakše, Tomáš Kocábek, Uday Kumar Killi, Filis Morina, Jaroslav Matoušek, 2018, original scientific article

Keywords: Citrus bark cracking viroid, differentially expressed genes, hop, pathogen, transcriptome analysis, viroids
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2. Dissection of dynamic transcriptome landscape of leaf, bract, and lupulin gland in hop (Humulus lupulus L.)
Ajay Kumar Mishra, Tomáš Kocábek, Vishnu Sukumari Nath, Praveen Awasthi, Ankita Shrestha, Uday Kumar Killi, Jernej Jakše, Josef Patzak, Karel Krofta, Jaroslav Matoušek, 2020, original scientific article

Keywords: bitter acids, prenylflavonoids, terpenoids, trichome, Humulus lupulus, lupulin glands, RNA sequencing
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3. Integrated proteo-transcriptomic analyses reveal insights into regulation of pollen development stages and dynamics of cellular response to apple fruit crinkle viroid (AFCVd)-infection in Nicotiana tabacum
Ankita Shrestha, Ajay Kumar Mishra, Jaroslav Matoušek, Lenka Steinbachová, David Potěšil, Vishnu Sukumari Nath, Praveen Awasthi, Tomáš Kocábek, Jernej Jakše, Lenka Záveská Drábková, Zbyněk Zdráhal, David Honys, Gerhard Steger, 2020, original scientific article

Keywords: AFCVd propagation and eradication, viroid replication, viroid degradation, Nicotiana tabacum, male gametophyte, proteome, RNA sequencing, RT qPCR
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4. Mapping the gene expression spectrum of mediator subunits in response to viroid infection in plants
Vishnu Sukumari Nath, Ankita Shrestha, Praveen Awasthi, Ajay Kumar Mishra, Tomáš Kocábek, Jaroslav Matoušek, Andrej Sečnik, Jernej Jakše, Sebastjan Radišek, Vipin Hallan, 2020, original scientific article

Keywords: differential expression, hop, mediator complex, Nicotiana benthamiana, Nicotiana tabacum, pathogen, quantitative reverse transcription PCR, viroid
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