1. Expression of cytokine-coding genes BMP8B, LEFTY1 and INSL5 could distinguish between ulcerative colitis and Crohn's diseaseDaša Jevšinek Skok, Nina Hauptman, Miha Jerala, Nina Zidar, 2021, original scientific article Keywords: inflammatory bowel disease, ulcerative colitis, Crohn's disease, inflammatory cytokines, expression, bioinformatics approach, experimental validation
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2. Metastatic EMT phenotype is governed by microRNA-200-mediated competing endogenous RNA networksSara Uhan, Nina Hauptman, 2022, review article Keywords: epithelial–mesenchymal transition, microRNA-200 family, epigenetic factors, EMT, ceRNA, lncRNA
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3. The integrative knowledge base for miRNA-mRNA expression in colorectal cancerDaša Jevšinek Skok, Nina Hauptman, Emanuela Boštjančič, Nina Zidar, 2019, original scientific article Keywords: web aplication, RNA expression, colorectal cancer, gene expression, knowledge base, cancer genome atlas, miRNA, mRNA, gene correlation, target genes
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4. DNA methylation biomarker panels for differentiating various liver adenocarcinomas, including hepatocellular carcinoma, cholangiocarcinoma, colorectal liver metastases and pancreatic adenocarcinoma liver metastasesTina Draškovič, Branislava Ranković, Nina Zidar, Nina Hauptman, 2024, original scientific article Keywords: methylation biomarkers, gastric adenocarcinoma, lung adenocarcinoma, hepatocellular carcinoma, cholangiocarcinoma, colorectal carcinoma, pancreatic adenocarcinoma, adenocarcinoma differentiation, DNA methylation
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5. Expression of fibrosis-related genes in liver and kidney fibrosis in comparison to inflammatory bowel diseasesMiha Jerala, Nina Hauptman, Nika Kojc, Nina Zidar, 2022, original scientific article Keywords: inflammatory bowel diseases, fibrosis, Crohn’s disease, ulcerative colitis, gene expression
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7. Circulating tumor DNA methylation biomarkers for characterization and determination of the cancer origin in malignant liver tumorsTina Draškovič, Nina Zidar, Nina Hauptman, 2023, review article Keywords: malignant liver tumors, liver metastases, biopsy, primary malignant liver tumors, liquid biopsy, cell-free DNA, circulating tumor DNA, tissue of origin determination, DNA methylation
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8. Circulating microRNA panels for detection of liver cancers and liver-metastasizing primary cancersBranislava Ranković, Nina Hauptman, 2023, review article Keywords: circulating microRNA, liver metastases, malignant liver tumors, plasma, primary malignant liver tumors, serum, tissue of origin determination
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10. AmiCaNina Hauptman, Jože Pižem, Daša Jevšinek Skok, 2024, original scientific article Keywords: miRNA, gene, expression, cancer, correlation, gene prioritization
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