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1. Helicobacter labacensis sp. nov., Helicobacter mehlei sp. nov., and Helicobacter vulpis sp. nov., isolated from gastric mucosa of red foxes (Vulpes vulpes)
Igor Gruntar, Bojan Papić, Mateja Pate, Urška Zajc, Matjaž Ocepek, Darja Kušar, 2020, original scientific article

Keywords: Helicobacter, novel species, red fox, Vulpes vulpes, gastric mucosa
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2. Salmonella Infantis in broiler flocks in Slovenia
Mateja Pate, Jasna Mićunović, Majda Golob, Lene Karine Vestby, Matjaž Ocepek, 2019, original scientific article

Keywords: Poultry diseases-drug therapy, Salmonella infections, animal-microbiology, biofilms-drug effects, chickens-microbiology, drug resistance, multiple, bacterial, feces-microbiology, genetic variation, microbial sensitivity tests, serogroup, Slovenia
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3. Antimicrobial resistance and virulence genes in Enterococcus faecium and Enterococcus faecalis from humans and retail red meat
Majda Golob, Mateja Pate, Darja Kušar, Urška Dermota, Jana Avberšek, Bojan Papić, Irena Zdovc, 2019, original scientific article

Keywords: Anti-bacterial agents - pharmacology, drug resistance bacterial - genetics, Enterococcus faecalis - genetics - drug effects - growth & development, Enterococcus faecium - genetics - drug effects - growth & development, virulence factors - genetics, meat - microbiology, vancomycin resistance - genetics, models animal, veterinary drugs
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4. Source tracking on a dairy farm reveals a high occurrence of subclinical mastitis due to hypervirulent Listeria monocytogenes clonal complexes
Bojan Papić, Majda Golob, Darja Kušar, Mateja Pate, Irena Zdovc, 2019, original scientific article

Keywords: Listeria monocytogenes, food safety, whole‐genome sequencing, pulsed‐field gel electrophoresis, virulence, cattle
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5. Retrospective investigation of listeriosis outbreaks in small ruminants using different analytical approaches for whole genome sequencing-based typing of Listeria monocytogenes
Bojan Papić, Darja Kušar, Irena Zdovc, Majda Golob, Mateja Pate, 2020, original scientific article

Keywords: epidemiology, veterinary, Listeria monocytogenes, outbreak, whole-genome sequencine, single nucleotide polymorphism, multilocus sequence typing, sheep, goats
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6. Mycobacteria in aquarium fish
Mateja Pate, Andrej Ovca, Vlasta Jenčič, Marija Žolnir-Dovč, Matjaž Ocepek, 2019, original scientific article

Keywords: fish tank granuloma, fish tuberculosis, mycobacteria, questionnaire, zoonosis
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7. Management of a Coxiella burnetii-infected sheep flock after an outbreak of Q fever in humans
Jana Avberšek, Mateja Pate, Andrej Škibin, Matjaž Ocepek, Branko Krt, 2019, original scientific article

Keywords: Coxiella burnetii, Q fever - prevention and control, sheep, vaccination, serology
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8. Genetic diversity of Listeria monocytogenes strains in ruminant abortion and rhombencephalitis cases in comparison with the natural environment
Bojan Papić, Mateja Pate, Benjamin Félix, Darja Kušar, 2019, original scientific article

Keywords: Microbiology - veterinary, Listeria monocytogenes - genetics, listeriosis, PFGE, MLST, population structure, cattle
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9. Ugotavljanje značilnosti in epidemioloških povezav med izolati bakterije Listeria monocytogenes s sekvenciranjem naslednje generacije
Bojan Papić, 2020, doctoral dissertation

Keywords: Molekularna epidemiologija, listerioza – mikrobiologija, Listeria monocytogenes – izolacija in čiščenje – genetika, tipizacija na osnovi zaporedij več lokusov – metode, sekvenciranje celotnega genoma – metode
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