1. Računska optimizacija izplena metana pridobljenega v semikontinuirani anaerobni razgradnjiLeon Deutsch, 2018, master's thesis Keywords: anaerobna razgradnja, bioplin, sirotka, optimizacija, fizikalno-kemijski parametri, test BMP, metan, alkaliteta, mikroelementi, NM-MDS
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2. Bioinformatics integration of microbiome and metabolomics data in the translational contextLeon Deutsch, 2022, doctoral dissertation Keywords: bioinformatics, metabolomics, metagenomcis, physical inactivity, data integration, systems biology, microbiome, urine, nuclear magnetic spectrometry
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3. The importance of objective stool classificaton in fecal 1H-NMR metabolomicsLeon Deutsch, Blaž Stres, 2021, original scientific article Keywords: feces, stool, classification, Bristol stool scale, BSS, JADBIO, gel network, intestinal abrasion
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4. Urine and Fecal $^1$H-NMR metabolomes differ significantly between pre-term and full-term born physically fit healthy adult malesLeon Deutsch, Tadej Debevec, Grégoire P. Millet, Damjan Osredkar, Simona Opara, Robert Šket, Boštjan Murovec, Minca Mramor, Janez Plavec, Blaž Stres, 2022, original scientific article Keywords: premature birth, $^1$H-NMR metabolomics, hypoxia, fecal metagenomics, biomarkers, activity, hypoxia
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5. General Unified Microbiome Profiling Pipeline (GUMPP) for large scale, streamlined and reproducible analysis of bacterial 16S rRNA data to predicted microbial metagenomes, enzymatic reactions and metabolic pathwaysBoštjan Murovec, Leon Deutsch, Blaž Stres, 2021, original scientific article Keywords: 16S rRNA, amplicon, Mothur, PICRUSt 2, Piphillin, genus, OTU, ASV, predicted metagenomes, predicted enzymatic reactions, predicted metabolic pathways, reproducible analyses, human microbiome, gut, intestine, mice
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7. How can we advance integrative biology research in animal science in 21st century?Tanja Kunej, Simon Horvat, Janez Salobir, Blaž Stres, Špela Mikec, Tomaž Accetto, Gorazd Avguštin, Bojana Bogovič Matijašić, Angela Cividini, Andreja Čanžek Majhenič, Marko Čepon, Leon Deutsch, Ida Djurdjevič, Emil Erjavec, Gregor Gorjanc, Antonija Holcman, Dušanka Jordan, Luka Juvančič, Stane Kavčič, Ajda Kermauner, Marija Klopčič, Tina Kocjančič, Milena Kovač, Aleš Kuhar, Andrej Lavrenčič, Jakob Leskovec, Alenka Levart, Špela Malovrh, Romana Marinšek-Logar, Petra Mohar Lorbeg, Mojca Narat, Tanja Obermajer, Diana Paveljšek, Tatjana Pirman, Klemen Potočnik, Ilona Rac, Vida Rezar, Irena Rogelj, Mojca Simčič, Aleš Snoj, Simona Sušnik Bajec, Tanja Šumrada, Dušan Terčič, Primož Treven, Maša Vodovnik, Manja Zupan Šemrov, Jaka Žgajnar, Silvester Žgur, Peter Dovč, 2022, short scientific article Keywords: animal science, integrative biology, systems science, ecology, COVID-19
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8. Spinal muscular atrophy after nusinersen therapyLeon Deutsch, Damjan Osredkar, Janez Plavec, Blaž Stres, 2021, original scientific article Keywords: spinal muscular atrophy, nusinersen, therapy, healthy control cohort, 1H-NMR metabolomics, males, females, serum, liquor, urine
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9. Computational framework for high-quality production and large-scale evolutionary analysis of metagenome assembled genomesBoštjan Murovec, Leon Deutsch, Blaž Stres, 2020, short scientific article Keywords: metagenomics, evolutionary analyses, microbial draft genomes, species boundaries, FastANI, genome assembly and binning
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