1. Razvoj hepatocelularnega karcinoma pri miših kot posledica prekinjene sinteze holesterola zaradi izbitja gena Cyp51 v jetrihKaja Blagotinšek Cokan, 2021, doctoral dissertation Keywords: Jetra, sinteza holesterola, lanosterol 14α-demetilaza (CYP51), mišji model, spolni dimorfizem, hepatocelularni karcinom, primerjalna funkcionalna genomska analiza
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2. Critical impact of different conserved endoplasmic retention mofits and dopamine receptor interacting proteins (DRIPs) on intracellular localization and trafficking of the D$_2$ dopamine receptor (D$_2$-R) isoformsKaja Blagotinšek Cokan, Maša Mavri, Catrin Rutland, Sanja Glisić, Milan Sencanski, Milka Vrecl, Valentina Kubale, 2020, review article Keywords: D$_2$ dopamine receptor, intracellular trafficking, endoplasmic reticulum, retention motifs, ICL3, interacting partners
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3. Chronic disruption of the late cholesterol synthesis leads to female-prevalent liver cancerKaja Blagotinšek Cokan, Žiga Urlep, Gregor Lorbek, Madlen Matz-Soja, Cene Skubic, Martina Perše, Jera Jeruc, Peter Juvan, Tadeja Režen, Damjana Rozman, 2020, original scientific article Keywords: cholesterol biosynthesis, hepatocellular carcinoma, sex dimorphism, lanosterol 14α-demethylase (CYP51)
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4. Common transcriptional program of liver fibrosis in mouse genetic models and humansKaja Blagotinšek Cokan, Žiga Urlep, Miha Moškon, Miha Mraz, Xiang Yi Kong, Winnie Eskild, Damjana Rozman, Peter Juvan, Tadeja Režen, 2021, original scientific article Keywords: bile acid, fatty acid, fibrosis, NAFLD, NASH, GEM
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5. The conserved arginine cluster in the insert of the third cytoplasmic loop of the long form of the D$_2$ dopamine receptor (D$_{2L}$-R) acts as an intracellular retention signalValentina Kubale, Kaja Blagotinšek Cokan, Jane N. Larsen, Karin A Eidne, Milka Vrecl, 2016, original scientific article Keywords: D$_2$ dopamine receptors, endoplasmic reticulum (ER) retention motif, confocal microscopy, surface expression, bioluminescence resonance energy transfer (BRET$^2$), cAMP signaling, molecular biology, energy transfer techniques, metabolism
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6. Mechanisms of pathogenicity and the quest for genetic modifiers of kidney disease in branchiootorenal syndromeCene Skubic, Kaja Blagotinšek Cokan, Jera Jeruc, Damjana Rozman, 2024, original scientific article Keywords: branchiootorenal syndrome, chronic kidney disease, modifier genes, patient-derived fibroblasts, phenotypic heterogeneity
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7. In situ spatial transcriptomic analysis of human skeletal muscle using the Xenium platformNejc Umek, Marija Meznarič, Žiga Šink, Kaja Blagotinšek Cokan, Uršula Prosenc Zmrzljak, Simon Horvat, 2025, original scientific article Keywords: spatial transcriptomic, skeletal muscle, xenium platform, muscle fibre, segmentation
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