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1. Conserved developmental transcriptomes in evolutionarily divergent species
Anup Parikh, Edward Roshan Miranda, Mariko Katoh-Kurasawa, Danny Fuller, Gregor Rot, Lan Žagar, Tomaž Curk, Richard Sucgang, Rui Chen, Blaž Zupan, William F. Loomis, Adam Kuspa, Gad Shaulsky, 2010, original scientific article

Keywords: evolucijska ohranjenost razvoja, RNA sekvenciranje, Dictyostelium discoideum, Dictyostelium purpureum
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2. Bacterial discrimination by Dictyostelid amoebae reveals the complexity of ancient interspecies interactions
Waleed Nasser, Balaji Santhanam, Edward Roshan Miranda, Anup Parikh, Kavina Juneja, Gregor Rot, Christopher Dinh, Rui Chen, Blaž Zupan, Gad Shaulsky, Adam Kuspa, 2013, original scientific article

Keywords: socialna ameba, bakterije, prepoznavanje bakterij, bioinformatika
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3. DictyExpress
Gregor Rot, Anup Parikh, Tomaž Curk, Adam Kuspa, Gad Shaulsky, Blaž Zupan, 2009, original scientific article

Keywords: bioinformatika, iskanje zakonitosti v podatkih, vizualizacija, mikromreže cDNA, spletni program
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4. New components of the Dictyostelium PKA pathway revealed by Bayesian analysis of expression data
Anup Parikh, Eryong Huang, Christopher Dinh, Blaž Zupan, Adam Kuspa, Devika Subramanian, Gad Shaulsky, 2010, original scientific article

Keywords: bayesovske mreže, analiza podatkov, ekspresija genov, genske poti PKA
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