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1. Rotational dynamics of a protein under shear flow studied by the Eckart frame formalism Petra Papež, Franci Merzel, Matej Praprotnik, 2023, original scientific article Keywords: energy, kinetics, molecules, protein structure, rotational dynamics |
2. Multiscale simulation of fluid flow interaction with biological macromolecules Petra Papež, 2024, doctoral dissertation Keywords: biological macromolecules, dissipative particle dynamics, open-boundary molecular dynamics, sound wave, principal component analysis, shear flow, Eckart frame formalism, vibration and rotation |