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Izražanje in izolacija fuzijskega proteina SpyCatcher003-mi3 ter vrednotenje njegovega sestavljanja v nanokletko
ID Lipužič, Marjeta (Author), ID Bratkovič, Tomaž (Mentor) More about this mentor... This link opens in a new window

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Abstract
Nanomateriali so že dolgo predmet raziskovanja kot učinkoviti sistemi za dostavo tarčnih molekul v celice. Sintetični nanonosilci imajo številne omejitve pri načrtovanju in izdelavi, zato so naravni nanonosilci, kot so virusu podobni delci, boljša alternativa. Virusu podobni delci so nano velikosti in posnemajo zgradbo virusnih delcev brez virusnega genoma. Kot takšni so zanimivi zlasti kot platforma za razvoj cepiv. Sistem razcepljenega proteina SpyCatcher:SpyTag izvira iz domene CnaB2 adhezijskega proteina za fibronektin FbaB iz Streptococcus pyogenes in omogoča enostavno konjugacijo proteinov, tudi virusu podobnih delcev. SpyCatcher je sestavljen iz 138 aminokislinskih ostankov in spontano tvori izopeptidno vez s peptidom SpyTag, ki ga sestavlja 13 aminokislinskih ostankov ter skupaj tvorita kovalentno vezan kompleks. Znanstveniki so razvili drugo generacijo sistema (SpyCatcher002:SpyTag002) na podlagi tehnike predstavitve na bakteriofagu in z racionalnim načrtovanjem na podlagi kristalne strukture tretjo (SpyCatcher003:SpyTag003), ki imata izboljšano kinetiko interakcij in sta bolj odporni na temperaturne spremembe. V okviru magistrske naloge smo v bakteriji Escherichia coli izrazili fuzijski protein SpyCatcher003-mi3, ki tvori stabilno nanokletko, SpyTag003 pa smo združili z monomernim rdečim fluorescenčnim proteinom (mRFP). Rekombinantni protein SpyTag003-mRFP smo za nadaljnjo analizo izolirali s kovinsko-kelatno afinitetno kromatografijo, SpyCatcher003-mi3 pa smo iz bakterijskega lizata oborili in nato prečistili z velikostno izključitveno kromatografijo. S poliakrilamidno gelsko elektroforezo v prisotnosti natrijevega dodecil sulfata smo določili čistost in homogenost, z Bradfordovo metodo pa koncentracijo izraženih proteinov. Pridobili smo zelo čista SpyCatcher003-mi3 in SpyTag003- mRFP, ki smo ju z reakcijo konjugacije v razmerju 1:1,5 v prid SpyTag003-mRFP združili. Uspešnost konjugacije smo primerjali z zmesjo SpyCatcher003-mi3 in AP4-mRFP, ki ne tvorita konjugata. Z metodo dinamičnega sipanja svetlobe smo dokazali, da je bila konjugacija proteinov uspešna in smo dobili monodisperzne in homogene konjugirane nanodelce mi3- SpyCatcher003:SpyTag003-mRFP. S poskusom z imortaliziranimi mišjimi makrofagi pa smo ocenili uspešnost fagocitoze nanodelcev. Na podlagi rezultatov lahko trdimo, da je sistem SpyCatcher:SpyTag enostavna in učinkovita platforma za izdelavo novih cepiv na osnovi nanodelcev. Razvoj in uporaba virusu podobnih delcev, združenih z rekombinantnimi antigeni, bi lahko prispevala k reševanju velikih izzivov, kot so hitro razvijajoči se patogeni ali izbruhi zoonoz.

Language:Slovenian
Keywords:virusu podobni delci, sistem SpyCatcher: SpyTag, rekombinantni proteini, nanokletka, cepiva
Work type:Master's thesis/paper
Organization:FFA - Faculty of Pharmacy
Year:2024
PID:20.500.12556/RUL-161390 This link opens in a new window
Publication date in RUL:11.09.2024
Views:165
Downloads:65
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Secondary language

Language:English
Title:Expression and purification of SpyCatcher003-mi3 fusion protein, and evaluation of its self-assembly into a nanocage
Abstract:
Nanomaterials have long been explored as efficient systems for delivering target molecules into cells. Synthetic nanocarriers have several design and manufacturing limitations, making natural nanocarriers such as virus-like particles (VLPs) are a better alternative. VLPs are nano-sized and mimic the structure of viral particles without the viral genome. As such, VLPs are a promising platform for vaccine design. The SpyCatcher:SpyTag split protein system originates from the CnaB2 domain of the Streptococcus pyogenes fibronectin adhesion protein FbaB and facilitates simple conjugation of proteins, including VLPs. SpyCatcher consists of 138 amino acid residues and spontaneously forms an isopeptide bond with the 13-amino acid peptide SpyTag, and together they form a covalently bound complex. Scientists have developed the second (SpyCatcher002, SpyTag002) and third generation (SpyCatcher003, SpyTag003) of this split protein system based on the phage display technique and crystal structure-guided rational design, respectively. These have improved interaction kinetics and are more resistant to temperature changes. In this Master’s thesis, we have expressed in Escherichia coli the SpyCatcher003-mi3 fusion protein, which forms a stable nanocage, while SpyTag003 was fused to a monomeric red fluorescent protein. The recombinant protein SpyTag003-mRFP was isolated for further analysis by immobilized metal affinity chromatography and the SpyCatcher003-mi3 was precipitated from bacterial lysate and then purified by size exclusion chromatography. Purity and homogeneity were determined by sodium dodecyl-sulfate polyacrylamide gel electrophoresis, and the concentration of the expressed proteins was determined by the Bradford method. Expression of both fusion proteins was successful, yielding highly pure SpyCatcher003-mi3 and SpyTag003-mRFP, which were fused by conjugation reaction in a 1:1.5 molar ratio in favour of SpyTag003-mRFP. The conjugation reaction was evaluated against the negative control of a mixture of SpyCatcher003-mi3 and AP4-mRFP (which do not form a conjugate). Using the dynamic light scattering method, we demonstrated that the protein conjugation was successful and a monodisperse and homogeneous mi3-SpyCatcher003:SpyTag003-mRFP nanoparticle conjugate was obtained. In an experiment with immortalised mouse macrophages, we evaluated the success of phagocytosis of nanoparticles. Based on the results, it can be concluded that the SpyCatcher:SpyTag system is a simple and efficient platform for the production of novel nanoparticle-based vaccines. The development and use of VLPs combined with recombinant antigens could contribute to overcoming major challenges such as rapidly evolving pathogens or zoonotic outbreaks.

Keywords:virus-like particles, SpyCatcher: SpyTag system, recombinant proteins, nanocage, vaccines

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