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Kloniranje in priprava MLKL (L38C, W109C) v bakteriji Escherichia coli
ID Jošt, Lev (Author), ID Gunčar, Gregor (Mentor) More about this mentor... This link opens in a new window

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Abstract
MLKL velja za izvršilca nekroptoze, oblike programirane nekrotične celične smrti, ki poteče, kadar je aktivnost kaspaz onemogočena. S preučevanjem zgradbe N-končnega svežnja štirih alfa-vijačnic MLKL smo ugotovili, da alfa-vijačnici H2 in H5 nista tesno pakirani in sta zato najbolj primerni za uvajanje mutacij in posledično disulfidnega mostička. Disulfidni mostiček bi lahko preprečil razprtje N-končnega svežnja štirih -vijačnic, ki je verjetno potrebno za efektorsko funkcijo MLKL, in s tem onemogočil ali oligomerizacijo ali pa vgraditev proteina v membrano. Cisteinska mutanta smo uvedli na mestu Leu 38 in na mestu Trp 109. Mutaciji smo uvedli v zapis za MLKL v vektorju pE SUMOpro Amp z vključkom opt1 (MLKL1, s kodonom optimiziranim za E. coli). Obe mutaciji sta uspeli, kar smo potrdili z določanjem nukleotidnega zaporedja. Zapis za SUMO-optMLKL1, v katerega smo uvedli mutaciji, smo s pomočjo IVA kloniranja vstavili v ekspresijski vektor pET22b-pelB. NaDS-PAGE analiza vzorcev poskusnega izražanja fuzijskega proteina v bakterijskih celicah E. coli seva BL21[DE3] in BL21 [DE3]pLysS kaže da se protein izraža v netopni frakciji. Le pri izražanju v sevu BL21 [DE3]pLysS pri 18 °C je nekaj proteina tudi topnega.

Language:Slovenian
Keywords:MLKL, nekroptoza, disulfidni mostiček
Work type:Bachelor thesis/paper
Typology:2.11 - Undergraduate Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2024
PID:20.500.12556/RUL-161376 This link opens in a new window
COBISS.SI-ID:214992643 This link opens in a new window
Publication date in RUL:10.09.2024
Views:221
Downloads:1791
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Secondary language

Language:English
Title:Cloning and expression of the MLKL (L38C, W109C) in Escherichia coli bacteria
Abstract:
MLKL is considered the executor of necroptosis, a form of programmed necrotic cell death that occurs when caspase activity is inhibited. By studying the structure of the N-terminal four-helix bundle of MLKL, we found that helixes H2 and H5 are not tightly packed and are therefore most suitable for introducing mutations and consequently a disulfide bond. Disulfide bond could hinder the opening of the N-terminal four-helix bundle, that is likely necessary for the effector function of MLKL, thereby preventing either oligomerization or the insertion of the protein into the membrane. We mutated Leu at position 38 and Trp at position 109 into cysteines. To execute this mutations, we used pE-SUMOpro Amp vector with inserted opt1 (MLKL1 that has codon optimized for E. coli). Both mutations were successful, as we confirmed by nucleotide sequencing. We inserted the SUMO-optMLKL1 sequence, with both mutations, into the expression vector pET22b-pelB using IVA-cloning. NaDS-PAGE analysis after the expression of the fusion protein in bacterial cells of E. coli strains BL21[DE3] and BL21 [DE3]pLysS indicates that the protein is in the insoluble fraction. However, after the expression in BL21 [DE3]pLysS strain at 18°C, we found some protein to be soluble.

Keywords:MLKL, necroptosis, disulfide bond

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