Insight into the complexity of male infertility : a multi-omics review

Podgrajšek, Rebeka (author), Hodžić, Alenka (author), Štimpfel, Martin (author), Kunej, Tanja (author), Peterlin, Borut (author)

Male infertility is a reproductive disorder, accounting for 40–50% of infertility. Currently, in about 70% of infertile men, the cause remains unknown. With the introduction of novel omics and advancement in high-throughput technology, potential biomarkers are emerging. The main purpose of our work was to overview different aspects of omics approaches in association with idiopathic male infertility and highlight potential genes, transcripts, non-coding RNA, proteins, and metabolites worth further exploring. Using the Gene Ontology (GO) analysis, we aimed to compare enriched GO terms from each omics approach and determine their overlapping. A PubMed database screening for the literature published between February 2014 and June 2022 was performed using the keywords: male infertility in association with different omics approaches: genomics, epigenomics, transcriptomics, ncRNAomics, proteomics, and metabolomics. A GO enrichment analysis was performed using the Enrichr tool. We retrieved 281 global studies: 171 genomics (DNA level), 21 epigenomics (19 of methylation and two histone residue modifications), 15 transcriptomics, 31 non-coding RNA, 29 proteomics, two protein posttranslational modification, and 19 metabolomics studies. Gene ontology comparison showed that different omics approaches lead to the identification of different molecular factors and that the corresponding GO terms, obtained from different omics approaches, do not overlap to a larger extent. With the integration of novel omics levels into the research of idiopathic causes of male infertility, using multi-omic systems biology approaches, we will be closer to finding the potential biomarkers and consequently becoming aware of the entire spectrum of male infertility, their cause, prognosis, and potential treatment.

• Language: English
• Keywords: genomics, epigenomics, transcriptomics, proteomics, male infertility
• Work type: Article
• Typology: 1.02 - Review Article
• Organization: MF - Faculty of Medicine; BF - Biotechnical Faculty
• Publication status: Published
• Publication version: Version of Record
• Year: 2024
• Number of pages: Str. 73-90
• Numbering: Vol. 70, no. 1
• PID: 20.500.12556/RUL-155310
• UDC: 575
• ISSN on article: 1939-6368
• DOI: 10.1080/19396368.2024.2317804
• COBISS.SI-ID: 190110723
• Publication date in RUL: 28.03.2024

Record is a part of a journal

• Title: Systems biology in reproductive medicine
• Publisher: Taylor & Francis
• ISSN: 1939-6368
• COBISS.SI-ID: 515091225

Licences

• License: CC BY-NC-ND 4.0, Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
• Link: http://creativecommons.org/licenses/by-nc-nd/4.0/
• Description: The most restrictive Creative Commons license. This only allows people to download and share the work for no commercial gain and for no other purposes.

Secondary language

• Language: Slovenian
• Keywords: genetika, genomika, večomike, biomarkerji, moški, neplodnost