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Raziskovanje kemijskega prostora indazolnih dvojnih zaviralcev z mitogenom aktivirane protein kinaze P38α in butirilholin esteraze
ID Krajšek, Katja (Author), ID Obreza, Aleš (Mentor) More about this mentor... This link opens in a new window, ID Ferjančič Benetik, Svit (Co-mentor)

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Abstract
Kompleksna patofiziologija Alzheimerjeve bolezni (AB), ki jo pojasnjuje več med seboj povezanih hipotez, nakazuje na smiselnost terapije, usmerjene na več tarč hkrati. Ta pristop smo uporabili tudi v sklopu magistrske naloge, pri kateri smo načrtovali, sintetizirali ter biokemijsko ovrednotili pet indazolnih dvojnih zaviralcev encimov butirilholin esteraze (BChE) in z mitogenom aktivirane protein kinaze p38α (p38α MAPK). Vloga in koncentracija BChE v možganih se v primeru AB povečata, medtem ko ima p38α MAPK pomembno vlogo pri posredovanju vnetnega odziva. S hkratnim zaviranjem BChE in p38α MAPK bi tako pri zdravljenju AB lahko povečali holinergično stimulacijo in zmanjševali nevrovnetje. Pri načrtovanju smo izhajali iz spojine ARRY-371797, ki je selektivni zaviralec p38α MAPK, ima pa tudi nekatere strukturne podobnosti z zaviralci BChE. Pri vseh spojinah smo iz ARRY-371797 ohranili indazolni obroč ter na mesto 5 vezano 2,4-difluorofenoksi skupino. Prav tako smo ohranili dimetilaminski del, saj ta v holin-vezavnem žepu BChE tvori pomembne kation-π interakcije s Trp82. Raziskali smo, kako na zaviralno aktivnost na obeh encimih vpliva: 1) vezava metilcikloheksana na mesto 1 in 2 indazolnega obroča, 2) podaljšanje verige N-(2-(dimetilamino)etil) amidnega fragmenta za 1 C atom ter 3) redukcija amida v amin. Zaviralno aktivnost spojin smo ovrednotili z Ellmanovo metodo ter ADP-Glo testom. Na primeru spojine 9A smo ugotovili, da se v primeru vezave metilcikloheksana na mesto N1 indazolnega obroča zaviralna aktivnost na encim BChE napram ARRY-371797 poveča. Še bolj pa se poveča, ko je ta substituent vezan na mesto N2, saj nam je na primeru spojine 9B uspelo doseči zaviranje BChE v nanomolarni koncentraciji (IC50 = 0,1669 µM), pri čemer sklepamo na energijsko ugodnejši premik acilne zanke v aktivnem mestu BChE. Po drugi strani pa substitucija na N2 namesto N1 mestu vodi v poslabšanje zaviralnega delovanja na encim p38α MAPK zaradi nekoliko spremenjene konformacije spojine v vezavnem mestu. Kljub poslabšanju zaviralne aktivnosti na p38α MAPK je bila ta v primeru spojine 9B še vedno v večji meri ohranjena (IC50 = 6,776 µM). Na podlagi teh rezultatov spojina 9B predstavlja najboljši primer dvojnega zaviralca teh dveh encimov. Glede podaljšanja N-(2-(dimetilamino)etil)amidnega fragmenta za 1 C atom smo ugotovili, da nima večjega vpliva na zaviralno delovanje na BChE in p38α MAPK. Z redukcijo amida v amin smo pri spojini 11A izgubili zaviralno delovanje na BChE in tako potrdili pomembno vlogo karbonilnega kisika. Pri spojinah 9A, 9B, 10A in 10B smo uspeli doseči selektivno delovanje na BChE napram AChE. Z raziskovanjem kemijskega prostora smo tako pridobili pomembne informacije, ki bodo v pomoč pri nadaljnjem razvoju dvojnih zaviralcev.

Language:Slovenian
Keywords:Alzheimerjeva bolezen, BChE, p38α MAPK, dvojni zaviralci, indazolni obroč
Work type:Master's thesis/paper
Organization:FFA - Faculty of Pharmacy
Year:2023
PID:20.500.12556/RUL-153136 This link opens in a new window
Publication date in RUL:19.12.2023
Views:192
Downloads:44
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Secondary language

Language:English
Title:Exploring the chemical space in indazole dual inhibitors of mitogen activated protein kinase P38α and butyrylcholine esterase
Abstract:
The complex pathophysiology of Alzheimer's disease (AD), explained by several interrelated hypotheses, indicates that targeting multiple targets simultaneously could be a reasonable and attractive approach for its treatment. We followed this approach in the context of our master's thesis, where we designed, synthesised and biochemically evaluated five indazole dual inhibitors of butyrylcholine esterase (BChE) and p38α mitogen-activated protein kinase (p38α MAPK). The role and concentration of BChE in the brain are increased in AD, whereas p38α MAPK plays an important role in mediating the inflammatory response. Thus, simultaneous inhibition of BChE and p38α MAPK in the treatment of AD could increase cholinergic stimulation and reduce neuroinflammation. The design was based on the compound ARRY-371797, which is a selective inhibitor of p38α MAPK, but also shows some structural similarities with BChE inhibitors. For all compounds, the indazole ring from ARRY-371797 and the 2,4-difluorophenoxy group were retained. We also retained the dimethylamine moiety, as it forms important cation-π interactions with Trp82 in the choline-binding pocket of BChE. We investigated how the inhibitory activity on both enzymes is affected by: 1) the binding of methylcyclohexane to sites N1 and N2 of the indazole ring, 2) the chain extension of the N-(2-(dimethylamino)ethyl)amide fragment by 1 C atom, and 3) the reduction of amide to amine. The inhibitory activity of the compounds was evaluated by Ellman method and ADP-Glo test. In the case of compound 9A, we found that if methylcyclohexane is bound to the N1 site of the indazole ring, the inhibitory activity on the BChE enzyme towards ARRY-371797 is increased. It is even more enhanced when this substituent is bound to the N2 site, since in the case of compound 9B we were able to obtain BChE inhibition at nanomolar concentration (IC50 = 0.1669 µM), suggesting an energetically more favourable shift of the acyl loop in the active site of BChE. On the other hand, the substitution at the N2 instead of the N1 site leads to a deterioration of the inhibitory activity on p38α MAPK, due to the slightly changed conformation of the compound in the binding site. Despite the impairment of the inhibitory activity on p38α MAPK, it was still largely preserved in the case of compound 9B (IC50 = 6.776 µM). Based on these results, compound 9B represents the best example of a dual inhibitor. With regard to the extension of the N-(2-(dimethylamino)ethyl)amide fragment by 1 C atom, we found that it has no significant effect on the inhibitory activity on both BChE and p38α MAPK. The reduction of amide to amine resulted in the loss of inhibitory activity on BChE in compound 11A, confirming the important role of carbonyl oxygen. In compounds 9A, 9B, 10A and 10B, we also achieved selective activity on BChE towards AChE. This chemical space exploration has therefore provided valuable information that will help in the further development of dual inhibitors.

Keywords:Alzheimer's disease, BChE, p38α MAPK, dual inhibitors, indazole ring

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