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Optimizacija encimskoimunskega testa na osnovi nanotelesa za določitev koncentracije virusnega proteina Nef v bioloških vzorcih
ID Žvanut, Samuel (Author), ID Lenassi, Metka (Mentor) More about this mentor... This link opens in a new window

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Abstract
Kljub nekaterim testom za detekcijo rezervoarjev virusa humane imunske pomanjkljivosti tipa 1 (HIV-1), sposobnih ponovne infekcije, manjkajo metode, ki bi ovrednotile obsežnost translacijsko sposobnih in posledično biološko aktivnih rezervoarjev HIV-1. Nef se dokazano sprošča iz rezervoarjev HIV-1 v telesne tekočine in ima funkcijo v patogenezi HIV-1. V nalogi smo optimizirali encimskoimunski test (ELISA) za detekcijo virusnega proteina Nef. ELISA smo izvedli na osnovi nanotelesa sdAb19 proti Nef, ki smo ga biotinilirali in vezali na nevtravidinsko podlago. V pufru smo uspeli detektirati rekombinantni Nef (rNef) pri meji ozadja 4,25 ng/ml in meji detekcije 6,79 ng/ml, kar sovpada s fiziološkimi koncentracijami Nef v plazmi okuženih. Razpon koncentracij, v katerem je ELISA na osnovi sdAb19 kvantitativna, je med 10 ng/ml in 400 ng/ml. Pri detekciji rNef, ki smo ga raztopili v človeškem serumu, smo opazili visoko mejo ozadja, detekcija rNef pa je bila neuspešna. Ob uspešni optimizaciji testa v kompleksnih bioloških tekočinah bi s pristopom, ki smo ga opisali v nalogi, lahko relativno učinkovito ovrednotili obsežnost aktivnih rezervoarjev, vpletenih v patogenezo HIV-1.

Language:Slovenian
Keywords:Nef, encimskoimunski test, nanotelo sdAb19
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Publisher:[S. Žvanut]
Year:2023
PID:20.500.12556/RUL-150017 This link opens in a new window
UDC:577:61(043.2)
COBISS.SI-ID:164359427 This link opens in a new window
Publication date in RUL:13.09.2023
Views:833
Downloads:67
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Secondary language

Language:English
Title:Optimization of nanobody-based immunoassay for detection of viral protein Nef in biological samples
Abstract:
Despite some tests for detecting reservoirs of human immunodeficiency virus type 1 (HIV-1) capable of causing reinfection, there is a lack of methods to assess the extent of translationally competent and consequently biologically active HIV-1 reservoirs. In this work, we optimized an enzyme-linked immunosorbent assay (ELISA) for detecting the viral protein Nef. Nef is released from HIV-1 reservoirs, is present in various biological fluids, and contributes to HIV-1 pathogenicity. The optimized ELISA utilized biotinylated anti-Nef nanobody sdAb19, immobilized on the neutravidin-coated surface. Recombinant Nef (rNef) was detected in a buffer with a limit of the blank at 4.25 ng/ml and a limit of detection at 6.79 ng/ml. These values align with physiological Nef concentrations in the plasma of infected individuals. The quantitative range of the sdAb19-based ELISA spans from 10 ng/ml to 400 ng/ml. Notably, we observed a high limit of the blank when detecting rNef diluted in human serum. Through further optimization of the assay in complex biological fluids, our method could prove efficient in evaluating the size of pathologically relevant active HIV-1 reservoirs.

Keywords:Nef, enzyme-linked immunosorbent assay, nanobody sdAb19

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