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Določanje podtipov limfocitov T na osnovi podatkov sekvenciranja RNA posameznih celic
ID Debeljak, Tilen (Author), ID Zorc, Minja (Mentor) More about this mentor... This link opens in a new window

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Abstract
Določevanje limfocitov T je z razvojem scRNA-seq dobilo nov vpogled v heterogeno sestavo limfocitov T. Pri limfocitih T poznamo več podtipov, ki imajo vsak svojo funkcijo. Iz sestave limfocitov T se lahko razbere bolezensko stanje pacienta. To je uporabno predvsem pri določevanju rakavih obolenj in pri kroničnih okužbah. scRNA-seq je relativno nova tehnologija, zato je še v procesu izpopolnjevanja. Tehnologija scRNA-seq nam omogoča opazovanje transkriptoma posameznih celic v vzorcu. Za izvedbo scRNA-seq so razvili različne protokole. Izziv pri scRNA-seq je velika količina podatkov, ki jih moramo analizirati, kar zahteva visoko računalniško zmogljivost. Na voljo imamo različna programska orodja za analizo. Analiza podatkov se začne s predobdelavo podatkov, pri čemer opravimo kontrolo kakovosti transkriptov in odpravimo neustrezne celice. Temu sledi kvantitativna analiza transkriptoma in kartiranje na referenčni genom. Po predobdelavi podatkov se lahko lotimo analize in vizualizacije podatkov. Opravljene študije so do zdaj dokazale, da s scRNA-seq pri limfocitih T odkrijemo večjo heterogenost podtipov v primerjavi s tradicionalnimi metodami.

Language:Slovenian
Keywords:scRNA-seq, transkriptom, limfociti T, anotacija celic
Work type:Bachelor thesis/paper
Typology:2.11 - Undergraduate Thesis
Organization:BF - Biotechnical Faculty
Year:2023
PID:20.500.12556/RUL-149788 This link opens in a new window
COBISS.SI-ID:164321539 This link opens in a new window
Publication date in RUL:10.09.2023
Views:470
Downloads:25
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Secondary language

Language:English
Title:Identification of T lymphocyte subtypes from single-cell RNA sequencing DATA
Abstract:
The advancement of scRNA-seq has brought new insights into the heterogeneous composition of T lymphocytes. Within T lymphocytes, several subtypes are known, each having its specific function. The composition of T lymphocytes can provide insights into a patient's disease state, particularly in the determination of cancerous conditions and chronic infections. scRNA-seq is a relatively novel technology and is still in the process of refinement. This technology allows us to observe the transcriptome of individual cells in a sample. Various protocols for conducting scRNA-seq have been developed. An inherent challenge in scRNA-seq is the substantial amount of data that needs to be analyzed, demanding high computational capacity. Different software tools are available for analysis. Data analysis begins with data preprocessing, including transcript quality control and the removal of unsuitable cells. Subsequently, quantitative transcriptomic analysis and mapping to a reference atlas are performed. Following data preprocessing, we can engage in data analysis and visualization to derive meaningful insights. Completed studies have demonstrated that scRNA-seq in T lymphocytes reveals a diverse heterogeneity of subtypes compared to traditional methods.

Keywords:scRNA-seq, transcriptome, cell annotation, lymphocytes T

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