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Odkrivanje ortobunjavirusov in flebovirusov v klopih v Sloveniji
ID Kmetič, Petra (Author), ID Avšič Županc, Tatjana (Mentor) More about this mentor... This link opens in a new window, ID Korva, Miša (Comentor)

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Abstract
Klopi so visoko specializirani obligatni hematofagni ektoparaziti. So pomembni prenašalci patogenov, vključno s številnimi virusi. Rod Orthobunyavirus sodi v družino Peribunyaviridae, Phlebovirus pa je rod virusov, ki spada v družino Phenuiviridae. Oba rodova sodita v red Bunyavirales. Cilj raziskave je bilo ugotoviti ali so ortobunjavirusi ali flebovirusi prisotni v klopih v Sloveniji ter analizirati genetsko raznolikost dokazanih virusov. V raziskavo smo vključili 8515 klopov, ki smo jih ulovili z metodo zastave, na 14 lokacijah po Sloveniji, vsak mesec od aprila 2005 do novembra 2008. Klope smo identificirali in jih razvrstili v skupine, glede na vrsto (Dermacentor reticulatus, Haemaphysalis concinna, Haemaphysalis punctata in Ixodes ricinus), spol, razvojni stadij, lokacijo in datum vzorčenja. Sledila je osamitev RNA iz vzorcev klopov, nato pa smo z molekularnimi metodami in nadaljnjo filogenetsko analizo nukleotidnih zaporedij segmenta L virusnega genoma, dokazali virus Uukuniemi (UUKV) in neuvrščene fleboviruse, ki smo jih dalje razdelili v štiri podskupine, genetsko sorodne z virusoma angl. Norway phlebovirus 1 in angl. Blacklegged tick phlebovirus 1, ki sodita v rod Ixovirus. Flebovirusi se ne razvrščajo v skupine glede na lokacijo vzorčenja. Ortobunjavirusov v klopih nismo dokazali. Prisotnost flebovirusov smo dokazali zgolj med klopi vrste Ixodes ricinus. Dokazali smo, da se prevalence okužbe klopov med različnimi lokacijami razlikujejo. Najpogosteje okužen razvojni stadij je bil odrasel klop.

Language:Slovenian
Keywords:ortobunjavirusi, flebovirusi, klopi, Ixodes ricinus, NGS, filogenetska analiza
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Publisher:[P. Kmetič]
Year:2023
PID:20.500.12556/RUL-146844 This link opens in a new window
UDC:578.2:595.421.616.9
COBISS.SI-ID:155780867 This link opens in a new window
Publication date in RUL:15.06.2023
Views:717
Downloads:150
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Secondary language

Language:English
Title:Detection of Orthobunyaviruses and Phleboviruses in ticks in Slovenia
Abstract:
Ticks are highly specialized obligate hematophagous ectoparasites. They are important vectors for the transmission of pathogens, including many viruses. The genus Orthobunyavirus belongs to the family Peribunyaviridae, and Phlebovirus is a genus of viruses belonging to the family Phenuiviridae. Both genera belong to the order Bunyavirales. The aim of the study was to determine the possible presence of orthobunyaviruses and phleboviruses in ticks captured in Slovenia, and to analyze their genetic diversity. The study examined 8515 ticks caught by the flagging vegetation, sampled monthly from April 2005 to November 2008, at 14 locations in Slovenia. Tick samples were identified and grouped according to species (Dermacentor reticulatus, Haemaphysalis concinna, Haemaphysalis punctata and Ixodes ricinus), sex, developmental stage, location and date of sampling. RNA was isolated from the pooled tick samples, and using molecular methods and phylogenetic analysis of the nucleotide sequences of the L segment of the viral genome, we detected Uukuniemi virus (UUKV) and unclassified phleboviruses, which were further divided into four subgroups, genetically related to Norway phlebovirus 1 and Blacklegged tick phlebovirus 1, which belong to the genus Ixovirus. Phleboviruses are not grouped by sampling site. We did not detect orthobunyaviruses in ticks. The presence of phleboviruses was detected only among ticks of the species Ixodes ricinus. We have demonstrated that the prevalence of phlebovirus in ticks varies depending on the location. The most frequently infected developmental stage was an adult tick.

Keywords:orthobunyaviruses, phleboviruses, ticks, Ixodes ricinus, NGS, phylogenetic analysis

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