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Database independent automated structure elucidation of organic molecules based on IR, $^1$H NMR, $^{13}$C NMR, and MS data
ID Pesek, Matevž (Author), ID Juvan, Andraž (Author), ID Jakoš, Jure (Author), ID Košmrlj, Janez (Author), ID Marolt, Matija (Author), ID Gazvoda, Martin (Author)

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Abstract
Herein, we report a computational algorithm that follows a spectroscopist-driven elucidation process of the structure of an organic molecule based on IR, $^1$H and $^{13}$C NMR, and MS tabular data. The algorithm is independent from database searching and is based on a bottom-up approach, building the molecular structure from small structural fragments visible in spectra. It employs an analytical combinatorial approach with a graph search technique to determine the connectivity of structural fragments that is based on the analysis of the NMR spectra, to connect the identified structural fragments into a molecular structure. After the process is completed, the interface lists the compound candidates, which are visualized by the WolframAlpha computational knowledge engine within the interface. The candidates are ranked according to the predefined rules for analyzing the spectral data. The developed elucidator has a user-friendly web interface and is publicly available (http://schmarnica. si).

Language:English
Keywords:algorithm, organic molecules, infrared spectroscopy, molecular structure, nuclear magnetic resonance spectroscopy, carbon, infrared light
Work type:Article
Typology:1.01 - Original Scientific Article
Organization:FRI - Faculty of Computer and Information Science
FKKT - Faculty of Chemistry and Chemical Technology
Publication status:Published
Publication version:Version of Record
Year:2021
Number of pages:Str. 756-763
Numbering:Vol. 61, iss. 2
PID:20.500.12556/RUL-144696 This link opens in a new window
UDC:547:544.1:004.65
ISSN on article:1549-9596
DOI:10.1021/acs.jcim.0c01332 This link opens in a new window
COBISS.SI-ID:49245187 This link opens in a new window
Publication date in RUL:08.03.2023
Views:654
Downloads:86
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Record is a part of a journal

Title:Journal of chemical information and modeling
Shortened title:J. chem. inf. mod.
Publisher:American Chemical Society
ISSN:1549-9596
COBISS.SI-ID:26533125 This link opens in a new window

Licences

License:CC BY 4.0, Creative Commons Attribution 4.0 International
Link:http://creativecommons.org/licenses/by/4.0/
Description:This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.

Secondary language

Language:Slovenian
Keywords:algoritem, organske molekule, infrardeča spektroskopija, molekulska struktura, jedrska magnetna resonanca, NMR

Projects

Funder:ARRS - Slovenian Research Agency
Project number:P1-0230
Name:Organska kemija: sinteza, struktura in aplikacija

Funder:ARRS - Slovenian Research Agency
Project number:J1-8147
Name:Ligandi s tzNHC strukturo v organokovinski kemiji in homogeni katalizi: tvorba vezi C-C in C-N v vodi

Funder:ARRS - Slovenian Research Agency
Project number:J1-9166
Name:Redefinicija in razširitev uporabe Sonogashirove reakcije pripajanja brez bakra

Funder:ARRS - Slovenian Research Agency
Project number:L1-9191
Name:Prepovedane droge, alkohol in tobak: epidemiologija na osnovi odpadnih vod, uspešnost čiščenja in ranljivost vodnega sistema

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