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Analiza variabilnosti gena JAK2 pri eritrocitozah
ID Banfi, Monika (Author), ID Debeljak, Nataša (Mentor) More about this mentor... This link opens in a new window, ID Kunej, Tanja (Co-mentor)

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Abstract
Eritrocitoza je redko bolezensko stanje s povišano maso rdečih krvnih celic, povišanim hematokritom in/ali s povišano koncentracijo hemoglobina. Bolezen lahko nastane iz več razlogov, največkrat pa je diagnosticirana kot policitemija vera, kot posledica pridobljenih nukleotidnih različic gena JAK2, najpogostejše različice V617F v eksonu 14 ali večih nukleotidnih različic v eksonu 12. Po drugi strani so prirojena nagnjenja za eritrocitozo redka, predvsem pa je genetsko ozadje le-teh precej raznoliko. Vloga gena JAK2 je do sedaj pri razvoju družinske eritrocitoze še precej slabo poznana. Veliko bolnikov s sumom na družinsko eritrocitozo (okoli 70 %) še vedno ostane brez ugotovljenega vzroka bolezni in jih tako diagnosticirajo kot bolnike z eritrocitozo neznanega vzroka. Namen raziskave je bil preveriti, ali so zarodne različice gena JAK2 prisotne pri izbranih bolnikih s potrjeno eritrocitozo neznanega vzroka in optimizirati metodo PCR za pomnoževanje izbranih eksonskih regij z vključenimi obmejnimi regijami intronov gena JAK2. Analizirali smo dva vzorca bolnikov iste družine in sedem kontrolnih vzorcev zdravih oseb. S sekvenciranjem po Sangerju smo potrdili dve, z analizo NGS v genu JAK2 predhodno odkriti različici, in sicer v eksonu 13 (rs1362123436) in v intronu 19 (rs780797578). Pri obeh bolnikih sta omenjeni različici heterozigotni, vendar za zdaj še brez pojasnjenega kliničnega pomena. Hkrati smo odkrili tudi nove različice v intronu 12 pri obeh bolnikih ter pri enem bolniku v intronu 18 ter 24. V namen ovrednotenja pomena vseh na novo odkritih nukleotidnih različic so potrebne nadaljne funkcijske preiskave.

Language:Slovenian
Keywords:genetska variabilnost, družinska eritrocitoza, policitemija vera, JAK2, različice nukleotidnega zaporedja
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Year:2022
PID:20.500.12556/RUL-140442 This link opens in a new window
COBISS.SI-ID:125649155 This link opens in a new window
Publication date in RUL:15.09.2022
Views:453
Downloads:59
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Secondary language

Language:English
Title:Analysis of genetic variability of JAK2 gene in erythrocytosis
Abstract:
Erythrocytosis is a rare condition caused by an increase in the red blood cell mass, hematocrit and/or heamoglobin. While the disease can occur due to several diverse causes, it is mostly diagnosed as polycythemia vera, an acquired type of erythrocytosis. Polycythemia vera develops upon acquired nucleotide variants in the JAK2 gene, most commonly the V617F variant in exon 14 or multiple other nucleotide variants in exon 12. On the other hand, congenital predispositions for familial erythrocytosis are rare and overall, their genetic background is relatively heterogeneous. The role of the JAK2 gene in the development of familial erythrocytosis is for now still poorly understood. Many patients with suspected familial erythrocytosis (about 70 %) remain without an identified cause of the disease and are thus diagnosed as having erythrocytosis of unknown cause. The aim of the study was to verify whether germline variants of the JAK2 gene are present in selected cohort of patients with confirmed erythrocytosis of unknown cause and to optimise the PCR method for amplification of selected exon and intron regions of gene JAK2. We included two samples of patients from the same family and seven control samples of healthy individuals. Two previously detected variants by NGS analysis in JAK2 gene were confirmed, one in exon 13 (rs1362123436) and another in intron 19 (rs780797578). Both variants are heterozygous, but yet without any significant clinical relevance. In addition, new nucleotide variants were detected in intron 12 in both patients and in introns 18 and 24 in one patient. To evaluate the significance of the newly discovered nucleotide variants, further functional tests will need to be performed in the future.

Keywords:genetic variability, familial erythrocytosis, polycythemia vera, JAK2, nucleotide variants

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