A non-redundant dataset of inter-residue lysine-lysine solvent accessible surface distances in homo-oligomeric protein complexes

Gaber, Aljaž (author)

This article contains inter-residue solvent accessible surface distances between lysines in a comprehensive dataset homo-oligomeric protein complex structures, downloaded from 3D Complex database. Solvent Accessible Surface Distances were calculated with Jwalk algorithm. To avoid unnecessary redundancy due to symmetry, we calculated only distances originating from the first subunit of each protein complex. Redundancy was further reduced by including only the shortest of the two possible inter-subunit alternatives in the final non-redundant dataset. For each protein complexes we also calculated weight ob subunits, number of lysines radius of gyration and average distances. This data can be used for structural analyses of homo-oligomeric protein complexes and for further optimization of distance-based restraints, such as those based on data obtained from chemical cross-linking coupled with mass spectrometry.

• Language: English
• Keywords: chemical cross-linking, homo-oligomers, solvent accessible surface distances
• Work type: Article
• Typology: 1.01 - Original Scientific Article
• Organization: FKKT - Faculty of Chemistry and Chemical Technology
• Publication status: Published
• Publication version: Version of Record
• Year: 2020
• Number of pages: 4 str.
• Numbering: Vol. 28, art. 104834
• PID: 20.500.12556/RUL-137730
• UDC: 577.112
• ISSN on article: 2352-3409
• DOI: 10.1016/j.dib.2019.104834
• COBISS.SI-ID: 1538451907
• Publication date in RUL: 29.06.2022

Record is a part of a journal

• Title: Data in brief
• Publisher: Elsevier
• ISSN: 2352-3409
• COBISS.SI-ID: 32117977

Licences

• License: CC BY-NC-ND 4.0, Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
• Link: http://creativecommons.org/licenses/by-nc-nd/4.0/
• Description: The most restrictive Creative Commons license. This only allows people to download and share the work for no commercial gain and for no other purposes.

Secondary language

• Language: Slovenian
• Keywords: prečno povezovanje, homooligomeri, topilu dostopne razdalje na površini

Projects

• Funder: ARRS - Slovenian Research Agency
• Project number: J1-7119
• Name: Biologija EpCAM na strukturnem nivoju kot osnova za učinkovito tumorsko ciljanje