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Optimizacija metod za osamitev sporogenih bakterij iz fecesa človeka
ID Dobovišek, Urška (Author), ID Accetto, Tomaž (Mentor) More about this mentor... This link opens in a new window, ID Mahnič, Aleksander (Comentor)

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Abstract
Črevesna mikrobiota človeka ima pomembno vlogo v človekovem življenju. Sodeluje pri prebavi, proizvaja kratko-verižne maščobne kisline in vitamine, ščiti gostitelja pred patogeni in vpliva na razvoj imunskega sistema. Poseben pomen imajo sporogeni predstavniki črevesne mikrobiote, ki zaradi lažjega prenosa spor omogočajo ponovno vzpostavitev ravnovesja po disbiozi, imajo pa tudi potencial za uporabo kot probiotiki. Za preverjanje in dokazovanje interakcij posameznih delov mikrobiote z gostiteljem in raziskave na črevesnih bakterijah je potrebno pridobiti čisto kulturo, kar nam omogoča le gojenje na trdnih gojiščih. Namen naše naloge je bila optimizacija metod za osamitev širokega spektra sporogenih bakterij iz fecesa človeka. Uporabili smo štiri vzorce fecesov, ki smo jih obdelali z alkoholnim šokom. Dobljene suspenzije spor smo sprva nacepili na trdna gojišča z dodatkom fekalne suspenzije ali vampnega soka, nato pa smo preverili še vpliv predhodne bogatitve suspenzije spor na uspešnost rasti na trdnih gojiščih. Za predhodno bogatitev smo uporabili štiri različna tekoča gojišča, ki so se razlikovala po razpoložljivih virih ogljika. Uporaba fekalne suspenzije je glede na ostale pristope na trdnih gojiščih povečala število različnih bakterijskih skupin. Predhodna bogatitev je omogočila rast nekaterim novim bakterijskih skupinam, hkrati pa je onemogočila razmnoževanje nekaterih drugih. Nacepitev predhodne bogatitve na trdna gojišča v primerjavi z direktno nacepitvijo suspenzije spor ni povečala števila različnih bakterijskih skupin, je pa omogočila zaznavo številnih še neidentificiranih bakterijskih skupin. Na podlagi dobljenih rezultatov lahko sklepamo, da je za osamitev širokega spektra nabora različnih sporogenih bakterijskih vrst iz fecesa človeka potrebna uporaba več različnih gojišč.

Language:Slovenian
Keywords:črevesna mikrobiota, kultivacija, sporogene bakterije, spore, fekalna suspenzija, bogatitev
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Place of publishing:Ljubljana
Publisher:[U. Dobovišek]
Year:2021
PID:20.500.12556/RUL-131236 This link opens in a new window
UDC:579.22/.26:577.2.083:575.111
COBISS.SI-ID:77703171 This link opens in a new window
Publication date in RUL:24.09.2021
Views:1476
Downloads:247
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Secondary language

Language:English
Title:Optimization of sporogenic fraction cultivation from human fecal samples
Abstract:
Human gut microbiota plays an important role in human life. Intestinal microbiota is involved in food metabolism, producing short-chain fatty acids and vitamins, protects the host against infection by pathogens and affect the development of the host's immune system. Spore-forming bacteria in human intestinal microbiota because of easy spore transfer allow establishment of homeostasis after dysbiosis and have a potential for use as probiotics. To know the interactions between the intestinal microbiota and the host and to allow research on intestinal bacteria it is necessary to obtain a pure culture, which can only grow on solid media. The aim of our master thesis was to optimize cultivation of sporogenic fraction from human fecal samples. Four faecal samples were treated with alcohol shock. Fistly we incoculated sporogenic fractions on solid media with the addition of fecal suspension or rumen fluid. Than we also examined the impact of enrichment of the sporogenic fractions on growth of spore-forming bacteria on solid media. Four different enrichment media were used with different available carbon sources. Use of feacal suspension compared to other approaches increased the number of different bacterial groups on solid media. Enrichment allowed the growth of some new bacterial groups but also prevented the reproduction of some others. The inoculation of enrichment on solid media compared to the direct inoculation of the sporogenic fraction did not increase the number of different bacterial groups, but it did allow the detection of new unidentified bacterial groups. Based on the obtained results we can conclude that the isolation of a wide range of different spore-forming bacterial species from human feces requires the use of several different media.

Keywords:gut microbiota, cultivation, spore-forming bacteria, spore, faecal suspension, enrichment

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