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Bioinformacijska analiza parov toksin-antitoksin cianobakterije Microcystis aeruginosa PCC 7806 in molekulsko kloniranje antitoksinov Bh695_0426 in Bh695_0430
ID Glavič, Kim (Author), ID Dolinar, Marko (Mentor) More about this mentor... This link opens in a new window

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Abstract
Sistemi toksin-antitoksin (TA) so genetski elementi, ki zapisujejo za relativno stabilen proteinski toksin, ki onemogoči rast celice, in nestabilen antitoksin, ki zavre škodljivi učinek kompatibilnega toksina. Njihova biološka vloga še ni povsem razumljena, znano pa je, da sodelujejo pri mnogih bioloških procesih, izmed katerih izstopajo postsegregacijska smrt, abortivna infekcija in bakterijska persistenca. Najdemo jih na številnih plazmidih in kromosomih mnogih arhej ter bakterij, med katere sodi tudi cianobakterija Microcystis aeruginosa PCC 7806. Kljub številčnosti sistemov TA v genomu te cianobakterije jih je bilo do sedaj le nekaj tudi eksperimentalno ovrednotenih, zato smo v sklopu tega diplomskega dela želeli zapisa za dva antitoksina izraziti in izolirati iz celic Escherichia coli. Z bioinformacijskimi orodji smo zbrali in analizirali predvidene pare TA ter izmed teh izbrali dva, katerih zapisa za antitoksina smo pomnožili. Z metodami molekulskega kloniranja smo gena za antitoksina Bh695_0426 in Bh695_0430 vstavili v klonirni vektor pJET1.2/blunt. Prenos v ekspresijski vektor pET-28b(+) ni bil uspešen. Uspešno izražanje genov za antitoksina in izolacija proteinskih produktov bi omogočila nadaljnje raziskave njihove strukture in funkcije, pa tudi regulacije izražanja TA. Zaradi tega bi bilo smiselno eksperimentalno delo z manjšimi spremembami ponoviti.

Language:Slovenian
Keywords:cianobakterije, Microcystis aeruginosa PCC 7806, sistemi toksin-antitoksin, antitoksin
Work type:Bachelor thesis/paper
Typology:2.11 - Undergraduate Thesis
Organization:FKKT - Faculty of Chemistry and Chemical Technology
Year:2021
PID:20.500.12556/RUL-129828 This link opens in a new window
COBISS.SI-ID:80181251 This link opens in a new window
Publication date in RUL:08.09.2021
Views:1527
Downloads:170
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Secondary language

Language:English
Title:Bioinformatic analysis of toxin-antitoxin pairs in the cyanobacterium Microcystis aeruginosa PCC 7806 and molecular cloning of antitoxins Bh695_0426 and Bh695_0430
Abstract:
Toxin-antitoxin (TA) systems are genetic elements that encode a relatively stable protein toxin that inhibits cell growth and an unstable antitoxin that inhibits the deleterious effect of the cognate toxin. Their biological function is not yet fully understood. However, they are known to participate in many biological processes, most important being postsegregational killing, abortive infection and bacterial persistence. They can be found on plasmids as well as chromosomes of numerous archaea and bacteria, including cyanobacterium Microcystis aeruginosa PPC 7806. Despite the abundance of TA systems in the genome of this cyanobacterium, only a few have been experimentally characterised so far. Therefore, our goal has been to express two antitoxins and isolate the protein products from Escherichia coli cells. Using bioinformatics tools, we collected and analysed the predicted TA pairs. From these, we selected two and amplified their antitoxin sequences. Using molecular cloning methods, we inserted the genes for the antitoxins Bh695_0426 and Bh695_0430 into the cloning vector pJET1.2/blunt. However, transfer of the antitoxins into the expression vector pET-28b(+) was unsuccessful. Successful expression of antitoxin genes and the isolation of protein products would enable further research of antitoxin function, structure and regulation of TA gene expression. It would therefore be reasonable to repeat experiments with a few adjustments.

Keywords:cyanobacteria, Microcystis aeruginosa PCC 7806, toxin-antitoxin systems, antitoxin

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