Mapping the gene expression spectrum of mediator subunits in response to viroid infection in plants

Nath, Vishnu Sukumari (author), Shrestha, Ankita (author), Awasthi, Praveen (author), Kumar Mishra, Ajay (author), Kocábek, Tomáš (author), Matoušek, Jaroslav (author), Sečnik, Andrej (author), Jakše, Jernej (author), Radišek, Sebastjan (author), Hallan, Vipin (author)

The mediator (MED) represents a large, conserved, multi-subunit protein complex that regulates gene expression through interactions with RNA polymerase II and enhancer-bound transcription factors. Expanding research accomplishments suggest the predominant role of plant MED subunits in the regulation of various physiological and developmental processes, including the biotic stress response against bacterial and fungal pathogens. However, the involvement of MED subunits in virus/viroid pathogenesis remains elusive. In this study, we investigated for the first time the gene expression modulation of selected MED subunits in response to five viroid species (Apple fruit crinkle viroid (AFCVd), Citrus bark cracking viroid (CBCVd), Hop latent viroid (HLVd), Hop stunt viroid (HSVd), and Potato spindle tuber viroid (PSTVd)) in two model plant species (Nicotiana tabacum and N. benthamiana) and a commercially important hop (Humulus lupulus) cultivar. Our results showed a differential expression pattern of MED subunits in response to a viroid infection. The individual plant MED subunits displayed a differential and tailored expression pattern in response to different viroid species, suggesting that the MED expression is viroid- and plant species-dependent. The explicit evidence obtained from our results warrants further investigation into the association of the MED subunit with symptom development. Together, we provide a comprehensive portrait of MED subunit expression in response to viroid infection and a plausible involvement of MED subunits in fine-tuning transcriptional reprogramming in response to viroid infection, suggesting them as a potential candidate for rewiring the defense response network in plants against pathogens.

• Language: English
• Keywords: differential expression, hop, mediator complex, Nicotiana benthamiana, Nicotiana tabacum, pathogen, quantitative reverse transcription PCR, viroid
• Work type: Article
• Typology: 1.01 - Original Scientific Article
• Organization: BF - Biotechnical Faculty
• Publication status: Published
• Publication version: Version of Record
• Year: 2020
• Number of pages: 10 str.
• Numbering: Vol. 21, iss. 7, art. 2498
• PID: 20.500.12556/RUL-128258
• UDC: 577.2
• ISSN on article: 1422-0067
• DOI: 10.3390/ijms21072498
• COBISS.SI-ID: 9458041
• Publication date in RUL: 07.07.2021

Record is a part of a journal

• Title: International journal of molecular sciences
• Shortened title: Int. j. mol. sci.
• Publisher: MDPI
• ISSN: 1422-0067
• COBISS.SI-ID: 2779162

Licences

• License: CC BY 4.0, Creative Commons Attribution 4.0 International
• Link: http://creativecommons.org/licenses/by/4.0/
• Description: This is the standard Creative Commons license that gives others maximum freedom to do what they want with the work as long as they credit the author.
• Licensing start date: 01.04.2020

Secondary language

• Language: Slovenian
• Keywords: hmelj, genetika, izražanje genov, Nicotiana benthamiana, Nicotiana tabacum, patogeni, viroidi, kvantitativna genetika, kvantitativna reverzna transkripcija, PCR