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Optimizacija priprave rekombinantnega monomernega proteina lizenina in njegovih por
ID Štromajer, Eva (Author), ID Podobnik, Marjetka (Mentor) More about this mentor... This link opens in a new window

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Abstract
Lizenin je proteinski toksin iz deževnika Eisenia foetida, ki tvori pore v lipidnih membranah. V celici nastaja v monomeri obliki in ob prepoznavanju tarčnih membranskih lipidov, predvsem sfingomielina, tvori najprej predporo iz 9 monomernih enot. Kasneje pride ob večjih konformacijskih spremembah do vsidranja tega oligomera v lipidni dvosloj in nastanka transmembranske pore. Lizeninska pora je zaradi svojih edinstvenih strukturnih, biokemijskih in biofizikalnih lastnosti zanimiva za uporabo v biotehnoloških aplikacijah. Za ta namen je ključno čim bolj učinkovito izražanje in čiščenje rekombinantnega monomernega proteina iz bakterijske celične suspenzije. V nalogi smo izvedli optimizacijo priprave monomerega proteina, vse od priprave ustreznega plazmidnega konstrukta, do postopkov čiščenja monomerega proteina in biološko aktivne pore. Za izboljšanje postopkov čiščenja smo izdelali plazmidni konstrukt za izražanje proteina v bakterijskih celicah, ki ima na C-koncu polihistidinski repek, kar omogoča čiščenje proteina z afinitetno kromatografijo. Položaj afinitetnega repka na C-koncu se je tekom poskusa izkazal za izboljšavo v primerjavi s položajem repka na N-koncu lizenina, saj smo na ta način iz suspenzije pridobili dvakrat večjo količino čistega proteina. Po izolaciji in čiščenju monomera smo porotvorno aktivnost lizenina preverili s testom hemolize, pravilnost zvitja pa smo preverili z merjenjem spektra cirkularnega dikroizma. Iz monomerov lizenina smo tudi pripravili pore na umetnih sistemih lipidnih membran, jih tudi izolirali in očistili.

Language:Slovenian
Keywords:biotehnologija, lizenin, monomeri rekombinantni protein, porotvorni protein, kromatografija, čiščenje proteina, Ni-NTA kromatografija, polihistidinski repek, tvorba pore, lipidni dvosloj
Work type:Master's thesis/paper
Typology:2.09 - Master's Thesis
Organization:BF - Biotechnical Faculty
Publisher:[E. Štromajer]
Year:2019
PID:20.500.12556/RUL-112666 This link opens in a new window
UDC:577
COBISS.SI-ID:6732826 This link opens in a new window
Publication date in RUL:31.10.2019
Views:1479
Downloads:251
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Secondary language

Language:English
Title:Optimization of preparation of monomeric protein lysenin and its pore
Abstract:
Lysenin is a protein toxin from the earthworm Eisenia fetida which forms pores in lipid membranes. It is produced as a water-soluble monomer in cells, which binds to sphingomyelin containing lipid membranes. Upon binding, it forms nonameric pre-pores on the surface on membranes, which undergo large conformational changes in order to insert into membranes and form functional pores. Lysenin pore has unique structural, biochemical and biophysical properties and that is why lysenin pore is very interesting for use in different biotechnological applications. For these purposes, it is crucial to have efficient expression and purification system to produce sufficient amounts of pure monomeric recombinant protein. In this master thesis, we performed optimization of monomeric protein lysenin preparation, from plasmid construction to purification method as well as pore assembly. For purification method improvement, we designed a recombinant plasmid vector for bacterial expression of a protein with C-terminal polyhistidine tag, which enables affinity chromatography purification of lysenin. Change of polyhistidine tag position on lysenin from N- to C-terminus turned out as an improvement. Namely, in the case of polyhistidne tag at the C-terminus the yield was two times higher in comparison with N-terminally tagged protein. After efficient isolation and purification of monomeric lysenin we tested its pore forming activity and checked the correct folding via circular dichroism. Moreover, we assembled lysenin pores on model lipid membranes and isolated and purified them.

Keywords:biotechnology, lysenin, monomer recombinant protein, pore-forming protein, chromatography purification, Ni-NTA chromatography, pore assembly, polyhistidine tag

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