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Analiza genetske variabilnosti gena HBB pri družinski eritrocitozi
ID Marentič, Ana (Author), ID Debeljak, Nataša (Mentor) More about this mentor... This link opens in a new window, ID Kunej, Tanja (Comentor)

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Abstract
Eritrocitoza je stanje povišane koncentracije eritrocitov v krvi, kar se odraža s povišanim hemoglobinom in hematokritom. Dedno obliko te bolezni imenujemo družinska eritrocitoza (DE). Bolezen delimo na primarno obliko z okvaro v kostnem mozgu in sekundarno obliko, pri kateri je razlog za eritrocitozo izven kostnega mozga. Gen HBB nosi zapis za podenoto beta hemoglobina, ki v eritrocitih veže kisik. Različice hemoglobina lahko povzročijo sekundarno obliko DE. Glavni namen raziskave je bil karakterizacija gena HBB v povezavi z DE in vzpostavitev metode za določanje nukleotidnega zaporedja pri bolnikih. S pregledom literature in podatkovnih zbirk smo določili različice in regije gena povezane z DE. Kodirajoče regije gena, vključno z deli sosednjih regij, smo pomnožili z metodo PCR ter s sekvenciranjem po Sangerju določili nukleotidno zaporedje pri bolnikih iz dveh družin s sumom na DE in pri zdravi kontroli. Pri vseh bolnikih in pri zdravi osebi smo odkrili tri različice gena, eno v kodirajoči regiji in dve v intronski regiji, ki jih v literaturi ne povezujejo z DE. Za zamenjavo nukleotida v kodirajoči regiji bi bile potrebne nadaljne analize o vplivu na funkcijo proteina. Uspešno smo razvili protokol za diagnostično metodo odkrivanja različic gena HBB pri bolnikih z DE.

Language:Slovenian
Keywords:družinska eritrocitoza, gen HBB, različica hemoglobina, visoka afiniteta hemoglobina do kisika, različica gena
Work type:Master's thesis/paper
Organization:BF - Biotechnical Faculty
Year:2019
PID:20.500.12556/RUL-107623 This link opens in a new window
Publication date in RUL:07.05.2019
Views:2267
Downloads:700
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Secondary language

Language:English
Title:Analysis of genetic variability of HBB gene in familial erythrocytosis
Abstract:
Erythrocytosis is a state of elevated levels of erythrocytes, hemoglobin and hematocrit. The inherited type of this disorder is called familial erythrocytosis (FE). Erythrocytosis can be divided into two major types– primary where there is a defect intrinsic to the erithroid cells in bone marrow, and secondary where there is a defect outside of the bone marrow. There are many genes involved in this disease, including HBB, which encodes information for a beta hemoglobin subunit. Hemoglobin is an oxygen transport protein in erythrocytes and can cause secondary FE. Main goal of the present study was to characterise the HBB gene in association to FE and to develop a diagnostic method for detection of sequence variants of HBB in patients suspected to have FE. HBB sequence variants and regions associated with FE were determined by literature and databases review. The coding regions of the gene and their flanking sequences were amplified using the PCR method and Sanger sequencing was used for determination of the nucleotide sequence of patients from two families with FE and a healthy control. Three polymorphisms were found in all patients and in a healthy family member, one in the coding region and two in the intronic region, none of which were previously associated with FE. Further analysis should be performed to determine the effect of the sequence variant found in the coding region. We have successfully established the protocol for diagnostic sequencing of the HBB gene in patients with FE.

Keywords:familial erythrocytosis, HBB gene, hemoglobin variant, high oxygen affinity hemoglobin, gene variant

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