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Uspešnost pridobivanja neinvazivnih genetskih vzorcev risov (Lynx Iynx) z vzmetnimi pastmi za dlake ter uporabnost metode za monitoring populacije risa
ID Smolej, Tadeja (Author), ID Skrbinšek, Tomaž (Mentor) More about this mentor... This link opens in a new window, ID Potočnik, Hubert (Co-mentor)

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Abstract
Zaradi velikih domačih okolišev, izogibanja človeku, pretežno nočne aktivnosti, nizkih populacijskih gostot, kamuflaže in bivanja v okoljih z gostim vegetacijskim pokrovom sta neposredno opazovanje evrazijskega risa in pridobivanje različnih podatkov ter neinvazivnih genetskih vzorcev težavna in časovno zahtevna. Metode monitoringa s pomočjo vonjalnih postaj oziroma pasti za dlake navadno izkoriščajo učinek vedenjskega odziva mačk na mačjo meto z drgnjenjem (ang. catnip response). V ogradi Živalskega vrta Ljubljana, v kateri bivajo trije evrazijski risi, smo od maja 2017 do konca januarja 2018 testirali učinkovitost neinvazivne metode vzorčenja z novimi, izboljšanimi vonjalnimi postajami oziroma aktivnimi vzmetnimi lovilci, ki omogočajo aktivno ujetje dlak z dlačnimi mešički ter individualno ujetje dlak le enega osebka. Vonjalna postaja, ki smo jo razvili v magistrski nalogi, je primerna in učinkovita pri zbiranju neinvazivnih genetskih vzorcev dlak s pomočjo pasivnih lovilcev in aktivnih vzmetnih lovilcev. Metoda je v kombinaciji s fotopastmi pomembna tudi za monitoring populacije risov s pomočjo videoposnetkov. V laboratoriju smo preverili, če vzorci vsebujejo dovolj dlak za genetske analize, nato pa smo jih analizirali in primerjali učinkovitost posameznih metod. Pripravili smo serije vzorcev z eno dlako z dlačnimi mešički ter s petimi in z desetimi dlakami. S pomočjo analize mikrosatelitskih zaporedij in indeksov kvalitete smo ugotovili, da je za optimalno izolacijo DNA in genotipizacijo najprimernejši vzorec desetih dlak z dlačnimi mešički.

Language:Slovenian
Keywords:evrazijski ris (Lynx lynx), monitoring, neinvazivni genetski vzorci, vonjalne postaje, vzmetne pasti za dlake
Work type:Master's thesis/paper
Organization:BF - Biotechnical Faculty
Year:2018
PID:20.500.12556/RUL-103502 This link opens in a new window
COBISS.SI-ID:4932943 This link opens in a new window
Publication date in RUL:19.09.2018
Views:1792
Downloads:450
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Secondary language

Language:English
Title:Effectiveness of collecting noninvasive genetic samples from a lynx (Lynx lynx) with coil spring hair traps and applicability of the method for lynx population monitoring
Abstract:
Due to their large home ranges, avoiding humans, predominantly night activity pattern, low population densities, camouflage and living in environments with a dense vegetation cover, direct observation of the Eurasian lynx, obtaining various data and noninvasive genetic samples are difficult to perform and time-consuming. Monitoring methods using scent stations or hair traps are usually based on cats’ behavioural response to catnip with rubbing or so called catnip response. From May 2017 to the end of January 2018, at ZOO Ljubljana, in the enclosure with three Eurasian lynxes we tested the effectiveness of the noninvasive sampling method with new, improved scent stations or so called active coil spring hair traps, which enable the active capture of hair with hair roots and individual hair capture of only one specimen. The scent station we developed in the master's thesis is suitable and efficient in collecting noninvasive genetic samples using passive hair traps and active coil spring hair traps. The method in combination with phototraps is also important in terms of monitoring the population with the help of videos. In the laboratory, we checked that the samples contained enough hair for genetic analysis, and then we analysed them and compared the effectiveness of individual methods. Using the analysis of microsatellite sequences and quality indexes, we determined that the sample with ten hairs with hair roots is the most suitable for optimal DNA isolation and genotyping.

Keywords:Eurasian lynx (Lynx lynx), monitoring, noninvasive genetic samples, scent stations, coil spring hair traps

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