Analiza genetske variabilnosti s hipoksijo induciranih transkripcijskih dejavnikov alfa pri družinski eritrocitozi.

Kristan, Aleša (author), Debeljak, Nataša (mentor), Kunej, Tanja (comentor)

Družinska eritrocitoza je redka, prirojena bolezen s heterogenim genetskim ozadjem, opredeljena s povišanim številom eritrocitov ter povečanim hematokritom in hemoglobinom v krvi. S hipoksijo inducirani transkripcijski dejavniki alfa (HIFA) vplivajo na povišanje števila eritrocitov z aktivacijo prepisovanja tarčnih genov pri nizkih koncentracijah kisika. Različice nukleotidnega zaporedja v genu za eno izmed treh izoform HIFA, za endotelijsko PAS domeno 1 (EPAS1), vodijo do razvoja družinske eritrocitoze tipa 4. Z raziskavo smo ob sodelovanju s Specializiranim hematološkim laboratorijem Kliničnega oddelka za hematologijo Univerzitetnega kliničnega centra (UKC) Ljubljana postavili diagnostični test za identifikacijo različic, povezanih z družinsko eritrocitozo, v nukleotidnem zaporedju gena EPAS1. Pri tem smo optimizirali reakcijo PCR za pomnoževanje treh izbranih regij gena EPAS1 ter z metodo po Sangerju določili zaporedje izbranih regij v skupni velikosti 1374 baznih parov. Z novo razvito diagnostično metodo smo analizirali vzorce štirih bolnikov iz treh družin in dveh zdravih preiskovancev kontrolne skupine. Rezultati so pokazali, da so vsi bolniki homozigoti (GG) na mestu različice nukleotidnega zaporedja c.C1035-7G (rs7557402) in trije bolniki homozigoti (TT) na mestu različice nukleotidnega zaporedja c.C1249+151T (rs11678817). Na obeh lokusih je bil sorodni preiskovanec kontrolne skupine heterozigot, medtem ko je bil nesorodni preiskovanec kontrolne skupine homozigot (CC). Za ovrednotenje pomena identificiranih različic nukleotidnega zaporedja pri nastanku eritrocitoze so potrebne nadaljnje raziskave.

• Language: Slovenian
• Keywords: genetska variabilnost, s hipoksijo inducirani transkripcijski faktor, HIFA, EPAS1, družinska eritrocitoza, različica nukleotidnega zaporedja
• Work type: Master's thesis/paper
• Typology: 2.09 - Master's Thesis
• Organization: BF - Biotechnical Faculty
• Publisher: [A. Kristan]
• Year: 2018
• PID: 20.500.12556/RUL-100707
• UDC: 575.822:60:616.155.191(043.2)
• COBISS.SI-ID: 8972665
• Publication date in RUL: 08.04.2018

KRISTAN, Aleša, 2018, Analiza genetske variabilnosti s hipoksijo induciranih transkripcijskih dejavnikov alfa pri družinski eritrocitozi. [online]. Master’s thesis. A. Kristan. [Accessed 10 April 2025]. Retrieved from: https://repozitorij.uni-lj.si/IzpisGradiva.php?lang=eng&id=100707

Secondary language

• Language: English
• Title: Analysis of genetic variability of hypoxia-inducible factors alpha in association with familial erythrocytosis

Abstract

Familial erythrocytosis is a rare congenital disorder with heterogenous genetic background, defined by increased red blood cell number, elevated haematocrit and haemoglobin in blood. Hypoxia-inducible factors alpha (HIFA) activate transcription of target genes in low-oxygen conditions and consequently upregulate red blood cell production. Sequence variants in gene for one of three HIFA isoforms, endothelial PAS domain protein 1 (EPAS1), lead to the development of familial erythrocytosis type 4. In collaboration with the Specialized haematological laboratory of the Clinical department of haematology, University Medical Centre Ljubljana, we established diagnostic test for identification of EPAS1 gene variants associated with erythrocytosis. We optimized PCR reaction for amplifiqation and sequenced three selected regions, with total length of 1374 base pairs, using Sanger method. Newly developed diagnostic method was used to analyse samples of four patients with unknown eythrocytosis from three different families and two healthy individuals from control group. All four patients were homozygous (GG) for sequence variant c.C1035-7G (rs7557402) and three patients were homozygous (TT) for sequence variant c.C1249+151 (rs11678817). Related individual from control group was heterozygous, whereas unrelated individual from control group was homozygous (CC) at both loci. To elucidate the effect of identified variants on development of erythrocytosis, additional research is needed in the future.

• Keywords: genetic variability, hypoxia inducible factor, HIFA, EPAS1, familial erythrocytosis, single-nucleotide variant