21. Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtrationJernej Jakše, Jenelle D. F. Meyer, Go Suzuki, A. John McCallum, Foo Cheung, Christopher Town, Michael J. Havey, 2008, original scientific article Keywords: žlahtnjenje rastlin, dednost, Allium cepa, bakterijski umetni kromosomi, čebula, allium cepa, inheritance, bacterial artificial chromosome, reduced representation, retrovirus, onion, transposon
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22. Identification of QTLs for alpha acid content and yield in hop (Humulus lupulus L.)Andreja Čerenak, Zlatko Šatović, Jernej Jakše, Zlata Luthar, Klaudija Carović-Stanko, Branka Javornik, 2009, original scientific article Keywords: hmelj, genetika, pridelek, gensko kartiranje, kakovost, humulus lupulus, yield, hop, alpha acid content, genetic mapping, genetics
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23. Origins of Allium ampeloprasum horticultural groups and a molecular phylogeny of the section Allium (Allium: Alliacea)Pablo Hirschegger, Jernej Jakše, Peter Trontelj, Borut Bohanec, 2010, original scientific article Keywords: molecular phylogeny, horticultural groups, allium, allium ampeloprasum, horticultural groups, chloroplast
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24. Development of transcript-associated microsatellite markers for diversity and linkage mapping studies in hop (Humulus lupulus L.)Jernej Jakše, Nataša Štajner, Zlata Luthar, Jean-Marc Jeltsch, Branka Javornik, 2011, original scientific article Keywords: genetika, genetsko kartiranje, mikrosatelitski markerji, hmelj, humulus lupulus, kartiranje, segregacijska analiza, hops, microsatellites, segregation analysis, mapping
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25. High-throughput genotyping of hop (Humulus lupulus L.) utilising diversity arrays technology (DArT)E. L. Howard, S. Whittock, Jernej Jakše, J. Carling, P. Matthews, G. Probasco, J. A. Henning, Peter E. Darby, Andreja Čerenak, Branka Javornik, A. Kilian, Anthony Koutoulis, 2011, original scientific article Keywords: hmelj, gensko kartiranje, mikrosateliti, molekulski markerji, hops, mapping, genetic mapping, genetic diversity, molecular markers, polymorphism
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26. Development of new microsatellite markers for Salvia officinalis L. and its potential use in conservation-genetic studies of narrow endemic Salvia brachyodon VandasIvan Radosavljević, Zlatko Satović, Jernej Jakše, Branka Javornik, Danijela Greguraš, Marija Jug-Dujaković, Zlatko Liber, 2012, original scientific article Keywords: salvia, common sage, laminaceae, microsatellites, microsatellite markers, conservation, cross-amplification, Dalmatian sage, genetic bottleneck, Lamiaceae, population genetics, short-tooth sage
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27. Identification of quantitative trait loci for resistance to Verticillium wilt and yield parameters in hop (Humulus lupulus L.)Jernej Jakše, Andreja Čerenak, Sebastjan Radišek, Zlatko Satović, Zlata Luthar, Branka Javornik, 2013, original scientific article Keywords: hmelj, hmeljeva uvelost, verticillium albo-atrum, odpornost na bolezni, gensko kartiranje, mikrosateliti, molekulski markerji, hops, verticilium wilt, genetic mapping, disease resistance, molecular markers
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28. Quantitative trait loci in hop (Humulus lupulus L.) reveal complex genetic architecture underlying variation in sex, yield and cone chemistryErin L. McAdam, Jules S. Freeman, Simon P. Whittock, Emily J. Buck, Jernej Jakše, Andreja Čerenak, Branka Javornik, Andrzej Lilian, Cai-Hong Wang, Dave Andersen, René E. Vaillancourt, Jason Carling, Ron Beatson, Lawrence Graham, Donna Graham, Peter E. Darby, Anthony Koutoulis, 2013, original scientific article Keywords: hop, humulus lupulus, molecular breeding, molecular markers, transferable markers, pleiotropy, secondary metabolites, essential oils, hop acid
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29. Application of microsatellite markers in grapevine and olivesJernej Jakše, Nataša Štajner, Lidija Tomić, Branka Javornik, 2013, independent scientific component part or a chapter in a monograph Keywords: molekularna genetika, vinska trta, oljka, genetski markerji, mikrosatelitski markerji, mikrosateliti, genom
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30. Dissection of dynamic transcriptome landscape of leaf, bract, and lupulin gland in hop (Humulus lupulus L.)Ajay Kumar Mishra, Tomáš Kocábek, Vishnu Sukumari Nath, Praveen Awasthi, Ankita Shrestha, Uday Kumar Killi, Jernej Jakše, Josef Patzak, Karel Krofta, Jaroslav Matoušek, 2020, original scientific article Keywords: bitter acids, prenylflavonoids, terpenoids, trichome, Humulus lupulus, lupulin glands, RNA sequencing
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