1. A de novo variant in OTX2 in a lamb with otocephalyJulia Maria Paris, Anna Letko, Irene Monika Häflinger, Tanja Švara, Mitja Gombač, Primož Klinc, Andrej Škibin, Estera Pogorevc, Cord Drögemüller, 2020, short scientific article Keywords: Agnathia, microstomia, precision medicine, rare disease, synotia, whole-genome sequencing, sheep
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2. A molecular survey, whole genome sequencing and phylogenetic analysis of astroviruses from roe deerUrška Jamnikar Ciglenečki, Vita Čivnik, Andrej Kirbiš, Urška Kuhar, 2020, original scientific article Keywords: astrovirus, Mamastrovirus, roe deer, phylogenetic analysis, wildlife, next generation sequencing, taxonomic classification
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3. Comparative proteomic profiling in compatible and incompatible interactions between hop roots and Verticillium albo-atrumStanislav Mandelc, Isaak Timperman, Sebastjan Radišek, Bart Devreese, Bart Samyn, Branka Javornik, 2013, original scientific article Keywords: hmelj, glivične bolezni, bolezni rastlin, Verticillium albo-atrum, proteomika, sekvencioniranje, hmeljeva uvelost, interakcija škodljivec-gostitelj, verticillium wilt, host-pathogen interactions, proteomics, sequencing
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4. The first detection and genetic characterization of four different honeybee viruses in wild bumblebees from CroatiaIvana Tlak Gajger, Laura Šimenc, Ivan Toplak, 2021, original scientific article Keywords: Bombus spp., honeybee viruses, deformed wing virus, black queen cell virus, acute bee paralysis virus, chronic bee paralysis virus, genetic characterization, sequencing, transmission routes, viruses, genetics, veterinary epidemiology, bees, virology, bumblebees
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5. ERIC and WGS typing of Paenibacillus larvae in SloveniaAlenka Žugelj, Bojan Papić, Irena Zdovc, Urška Zajc, Majda Golob, Jana Avberšek, Darja Kušar, 2021, original scientific article Keywords: Paenibacillus larvae, American foulbrood (AFB), ERIC-PCR, whole-genome sequencing (WGS), transmission, outbreak investigation, molecular sequence data, genotype
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6. Genomic insights into the emergence and spread of methicillin-resistant Staphylococcus pseudintermedius in veterinary clinicsBojan Papić, Majda Golob, Irena Zdovc, Darja Kušar, Jana Avberšek, 2021, original scientific article Keywords: antimicrobial susceptibility testing, epidemiology, methicillin-resistant Staphylococcus pseudintermedius (MRSP), small animal clinic, whole-genome sequencing (WGS)
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7. Lignin intermediates lead to phenyl acid formation and microbial community shifts in meso- and thermophilic batch reactorsEva Maria Prem, Mira Mutschlechner, Blaž Stres, Paul Illmer, Andreas Otto Wagner, 2021, original scientific article Keywords: Bio-methane, Phenyl acids, Anaerobic digestion, Lignin intermediates, Amplicon sequencing
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8. Beer spoiling mechanisms of Lactobacillus brevisMateja Govže, 2017, master's thesis Keywords: beer, hop, Humulus lupulus, beer spoilage, lactic acid bacteria, Lactobacillus brevis, genome, genome sequencing, genome analysis, RNA sequencing, transcriptomic analysis, gene expression analysis, fenotypic analysis
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9. Use of the black soldier fly (Hermetia illucens) for protein production from organic wastes and its microbiomeTajda Bogataj, 2018, master's thesis Keywords: wastes, biodegradable wastes, food waste, oil waste, black soldier fly, Hermetia illucens, larvae, prepupae, waste reduction, gut microbiota, sequencing
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10. Staphylococcus pseudintermedius septicemia in puppies after elective cesarean sectionMaja Zakošek, Tanja Švara, Irena Zdovc, Bojan Papić, Jana Avberšek, Darja Kušar, Janko Mrkun, 2019, original scientific article Keywords: staphylococcal infections, whole genome sequencing, milk, dogs
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