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1. Review and assessment of Boolean approaches for inference of gene regulatory networks Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon, 2022, review article Keywords: Boolean network inference, gene regulatory networks, static validation, dynamic validation, systems biology |
2. Deep learning of tissue-specific gene expression from DNA sequences Uroš Polanc, 2023, master's thesis Keywords: bioinformatics, convolutional neural network, DNA, DNABERT, gene expression, machine learning, sequence motifs, mRNA, predictive models, regulatory mechanisms, tissue-specific gene expression, tissue-specificity |