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1. Origins of Allium ampeloprasum horticultural groups and a molecular phylogeny of the section Allium (Allium: Alliacea)
Pablo Hirschegger, Jernej Jakše, Peter Trontelj, Borut Bohanec, 2010, original scientific article

Keywords: molecular phylogeny, horticultural groups, allium, allium ampeloprasum, horticultural groups, chloroplast
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2. A phylogenetic perspective on 160 years of troubled taxonomy of Niphargus (Crustacea: Amphipoda)
Cene Fišer, Boris Sket, Peter Trontelj, 2008, original scientific article

Keywords: phylogeny, taxonomy, Niphargus, Amphipoda, Crustacea
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3. Biogeography and phylogenetic relations within the Dinaric subgenus Monolistra (Microlistra) (Crustacea: Isopoda: Sphaeromatidae), with a description of two new species
Simona Prevorčnik, Rudi Verovnik, Maja Zagmajster, Boris Sket, 2010, original scientific article

Keywords: phylogeny, subterranean
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4. A method for measuring support for synapomorphy using character state distributions on phylogenetic trees
Martin Turjak, Peter Trontelj, 2012, original scientific article

Keywords: phylogeny
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5. Evolution of microgastropods (Ellobioidea, Carychiidae)
Aleksander M. Weigand, Adrienne Jochum, Rajko Slapnik, Jan Schnitzler, Eugenia Zarza, Annette Klussmann-Kolb, 2013, original scientific article

Keywords: integrative taxonomy, protracted speciation, subterranean environment, cryptic diversity, DNA barcoding, allopatric diversification, phylogeny
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6. Multiple glacial refugia of the low-dispersal ground beetle Carabus irregularis
Katharina Homburg, Claudia Drees, Martin M. Gossner, Laszlo Rakosy, Al Vrezec, Thorsten Assmann, 2013, original scientific article

Keywords: ecology, phylogeny, zoogeograpy
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7. A molecular survey and phylogenetic analysis of porcine circovirus type 3 using oral fluid, faeces and serum
Jan Plut, Urška Jamnikar Ciglenečki, Irena Golinar, Tanja Knific, Marina Štukelj, 2020, original scientific article

Keywords: Circoviridae infections - virology - veterinary, polymerse chain reaction - methods, phylogeny, genome viral - genetics, sequence analysis, DNA, swine
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8. Age estimates for some subterranean taxa and lineages in the Dinaric Karst
Peter Trontelj, Špela Gorički, Slavko Polak, Rudi Verovnik, Valerija Zakšek, Boris Sket, 2007, original scientific article

Keywords: speleobiologija, molekularna ura, molekularna filogenija, filogeografija, Dinarski kras, spelobiologija, molecular clock, molecular phylogeny, phylogeography, Dinaric Karst
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9. Y-chromosome haplogroup I prehistoric gene flow in Europe
Siiri Rootsi, 2006, original scientific article

Keywords: phylogeny of Y-chromosomal markers, haplogroup I sub-clades, late-glacial expansions, neolithic dispersals
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10. Redescription of two subterranean amphipods Niphargus molnari Méhely, 1927 and Niphargus gebhardti Schellenberg, 1934 (Amphipoda, Niphargidae) and their phylogenetic position
Valerija Zakšek, Cene Fišer, Dorottya Angyal, Gergely Balázs, Virág Krízsik, 2015, original scientific article

Keywords: redescription, morphology, phylogeny, endemism, SEM, Niphargus
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