1. Guided extraction of genome-scale metabolic models for the integration and analysis of omics dataAndrew Walakira, Damjana Rozman, Tadeja Režen, Miha Mraz, Miha Moškon, 2021, izvirni znanstveni članek Ključne besede: genome-scale metabolic model, model extraction methods, context-specific metabolic model, omics data integration, subsystem enrichment analysis, model interpretability Celotno besedilo (datoteka, 1,95 MB) Gradivo ima več datotek! Več... |
2. Multiscale modelling and systems analysis of potato spatio-temporal immune signallingMaja Zagorščak, 2021, doktorska disertacija Ključne besede: pan-transcriptome, differential networks, multi-omics, time-series, spatial response, multi-way interactions, plant immune signalling Celotno besedilo (datoteka, 13,88 MB) |
3. Determining the molecular background of endometrial receptivity in adenomyosisErika Prašnikar, Tanja Kunej, Katja Repnik, Uroš Potočnik, Jure Knez, Borut Kovačič, 2020, izvirni znanstveni članek Ključne besede: candidate genes, endometrial receptivity, gene set enrichment analysis (GSEA), multi-omics, protein-protein interaction network (PPIN), adenomyosis, endometriosis, gene expression, genetic association studies Celotno besedilo (datoteka, 5,01 MB) Gradivo ima več datotek! Več... |
4. Transcriptomics of receptive endometrium in women with sonographic features of adenomyosisErika Prašnikar, Tanja Kunej, Mario Gorenjak, Uroš Potočnik, Borut Kovačič, Jure Knez, 2022, izvirni znanstveni članek Ključne besede: adenomyosis, assisted reproductive techniques (ART), data integration, endometrial receptivity, enrichment pathway analysis, omics approaches, RNA-seq, systems biology, transcriptomics, window of implantation Celotno besedilo (datoteka, 3,76 MB) Gradivo ima več datotek! Več... |
5. Towards a multi-omics of male infertilityAna Ogrinc, Aleksander Turk, Tanja Kunej, 2023, pregledni znanstveni članek Ključne besede: DNA methylation, epigenetics, expression, male infertility, multi-omics, non-coding RNAs (ncRNAs) Celotno besedilo (datoteka, 633,95 KB) Gradivo ima več datotek! Več... |
6. Integration and analysis of scRNAseq data using genome-scale metabolic modelsJurij Nastran, 2024, magistrsko delo/naloga Ključne besede: genome-scale metabolic models, model extraction methods, context-specific metabolic models, omics data integration, metabolism, cancer, single-cell RNA sequencing data Celotno besedilo (datoteka, 9,00 MB) |