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2. Molecular epidemiology and characterization of enteroviruses detected in cerebrospinal fluid and respiratory samples in Slovenia, 2014–2023Nataša Berginc, Maja M. Lunar, Nina Šramel, Mario Poljak, 2024, original scientific article Keywords: cerebrospinal fluid, CSF, enteroviruses, respiratory samples, surveillance, typing
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3. Searching for alternative high DNA-yielding bone types for DNA analysis of aged skeletal remainsAja Golob, Pia Kravanja, Monica Concato, Tamara Leskovar, Irena Zupanič-Pajnič, 2024, original scientific article Keywords: aged skeletal remains, ancient DNA, DNA preservation, sampling strategy, STR typing
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4. Retrospective investigation of listeriosis outbreaks in small ruminants using different analytical approaches for whole genome sequencing-based typing of Listeria monocytogenesBojan Papić, Darja Kušar, Irena Zdovc, Majda Golob, Mateja Pate, 2020, original scientific article Keywords: epidemiology, veterinary, Listeria monocytogenes, outbreak, whole-genome sequencine, single nucleotide polymorphism, multilocus sequence typing, sheep, goats
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5. Antimicrobial and modulatory activity of selected phytochemicals and epidemiological characteristics of antibiotic resistance in Camylobacter jejuniJasna Kovač, 2015, doctoral dissertation Keywords: Campylobacter jejuni, foodborne pathogens, antibiotic resistance, resistance modulation, plant extracts, pinocembrin, Alpinia katsumadai, essential oils, phytochemicals, alpha pinene, efflux inhibitors, adaptation response, epidemiology, MLST, gyr A typing, whole genome sequences, clonal expansion, campylobacteriosis prevalence, mathematical modelling
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6. Analysis of the global population structure of Paenibacillus larvae and outbreak investigation of American foulbrood using a stable wgMLST schemeBojan Papić, Margo Diricks, Darja Kušar, 2021, original scientific article Keywords: Paenibacillus larvae, American foulbrood, whole-genome sequencing, whole-genome multilocus sequence typing, core-genome multilocus sequence typing, whole-genome single nucleotide polymorphism, genotype, molecular sequence
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7. Antibiotic resistance, virulence factors, phenotyping, and genotyping of E. coli isolated from the feces of healthy subjectsStefano Raimondi, Lucia Righini, Francesco Candeliere, Eliana Musmeci, Francesca Bonvicini, Giovanna Gentilomi, Marjanca Starčič Erjavec, Alberto Amaretti, Maddalena Rossi, 2019, original scientific article Keywords: Escherichia coli, typing, gut microbiota, PFGE, pulsed-field gel electrophoresis, virulence, antibiotic resistance, conjugation, curli, co-occurrence
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8. Using whole-genome sequencing to assess the diversity of Paenibacillus larvae within an outbreak and a beekeeping operationBojan Papić, Majda Golob, Irena Zdovc, Jana Avberšek, Metka Pislak, Darja Kušar, 2021, original scientific article Keywords: Paenibacillus larvae, American foulbrood, AFB, whole-genome sequencing, WGS, whole-genome multilocus sequence typing, wgMLST, outbreak, beekeeping operation, molecular sequence data, genotype
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9. Antimicrobial resistance and molecular characterization of methicillin-resistant Staphylococcus aureus from two pig farmsMajda Golob, Mateja Pate, Darja Kušar, Urška Zajc, Bojan Papić, Matjaž Ocepek, Irena Zdovc, Jana Avberšek, 2022, original scientific article Keywords: livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA), pigs, multidrug resistance (MDR), spa typing, longitudinal study
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10. Legionella pneumophila—epidemiology and characterization of clinical isolates, Slovenia, 2006–2020Darja Keše, Aljoša Obreza, Tereza Rojko, Tjaša Cerar Kišek, 2021, original scientific article Keywords: Legionnaires' disease, diagnosis, epidemiology, Legionella pneumophila typing, cultivation
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