1. Guided extraction of genome-scale metabolic models for the integration and analysis of omics dataAndrew Walakira, Damjana Rozman, Tadeja Režen, Miha Mraz, Miha Moškon, 2021, original scientific article Keywords: genome-scale metabolic model, model extraction methods, context-specific metabolic model, omics data integration, subsystem enrichment analysis, model interpretability Full text (file, 1,95 MB) This document has more files! More... |
2. Multiscale modelling and systems analysis of potato spatio-temporal immune signallingMaja Zagorščak, 2021, doctoral dissertation Keywords: pan-transcriptome, differential networks, multi-omics, time-series, spatial response, multi-way interactions, plant immune signalling Full text (file, 13,88 MB) |
3. Determining the molecular background of endometrial receptivity in adenomyosisErika Prašnikar, Tanja Kunej, Katja Repnik, Uroš Potočnik, Jure Knez, Borut Kovačič, 2020, original scientific article Keywords: candidate genes, endometrial receptivity, gene set enrichment analysis (GSEA), multi-omics, protein-protein interaction network (PPIN), adenomyosis, endometriosis, gene expression, genetic association studies Full text (file, 5,01 MB) This document has more files! More... |
4. Transcriptomics of receptive endometrium in women with sonographic features of adenomyosisErika Prašnikar, Tanja Kunej, Mario Gorenjak, Uroš Potočnik, Borut Kovačič, Jure Knez, 2022, original scientific article Keywords: adenomyosis, assisted reproductive techniques (ART), data integration, endometrial receptivity, enrichment pathway analysis, omics approaches, RNA-seq, systems biology, transcriptomics, window of implantation Full text (file, 3,76 MB) This document has more files! More... |
5. Towards a multi-omics of male infertilityAna Ogrinc, Aleksander Turk, Tanja Kunej, 2023, review article Keywords: DNA methylation, epigenetics, expression, male infertility, multi-omics, non-coding RNAs (ncRNAs) Full text (file, 633,95 KB) This document has more files! More... |
6. Integration and analysis of scRNAseq data using genome-scale metabolic modelsJurij Nastran, 2024, master's thesis/paper Keywords: genome-scale metabolic models, model extraction methods, context-specific metabolic models, omics data integration, metabolism, cancer, single-cell RNA sequencing data Full text (file, 9,00 MB) |