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1. Computational approaches for gene network discovery
Tomaž Curk, 2007, doctoral dissertation

Keywords: machine learning, bioinformatics, visualization, rule-based clustering, gene networks, functional genomics, modeling regulation of gene expression, decomposition of gene expression profile signatures, dissertations
Full text (file, 1,64 MB)

2. Review and assessment of Boolean approaches for inference of gene regulatory networks
Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon, 2022, review article

Keywords: Boolean network inference, gene regulatory networks, static validation, dynamic validation, systems biology
Full text (file, 1,07 MB) This document has more files! More...

3. SAILoR
Žiga Pušnik, Miha Mraz, Nikolaj Zimic, Miha Moškon, 2024, original scientific article

Keywords: Boolean network inference, context-specific gene regulatory networks, prior knowledge integration, multi-objective optimization
Full text (file, 3,87 MB) This document has more files! More...

4. Knowledge graph-primed deep learning to identify condition-specific gene importance
Aleš Kert, 2024, master's thesis

Keywords: neural networks, gene expression, interaction networks, knowledge network, prior knowledge
Full text (file, 4,14 MB)
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