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1. Embedding to Reference t-SNE Space Addresses Batch Effects in Single-Cell Classification Pavlin Gregor Poličar, 2019, master's thesis/paper Keywords: batch effects, embedding, t-SNE, visualization, single-cell transcriptomics, data integration, domain adaptation |
2. Effect of sample handling on gene expression in single cells of islets of Langerhans. Katarina Valentinčič, 2024, master's thesis Keywords: batch effects, beta cells, bioinformatics, differential gene expression analysis, gene set enrichment analysis, scRNA-seq, type 2 diabetes |
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