1. A molecular survey, whole genome sequencing and phylogenetic analysis of astroviruses from roe deerUrška Jamnikar Ciglenečki, Vita Čivnik, Andrej Kirbiš, Urška Kuhar, 2020, original scientific article Keywords: astrovirus, Mamastrovirus, roe deer, phylogenetic analysis, wildlife, next generation sequencing, taxonomic classification
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2. A molecular survey and phylogenetic analysis of porcine circovirus type 3 using oral fluid, faeces and serumJan Plut, Urška Jamnikar Ciglenečki, Irena Golinar, Tanja Knific, Marina Štukelj, 2020, original scientific article Keywords: viral disease, pig oral fluid, faeces, serum, PCV3, PCR, first report, Slovenia, Circoviridae infections - virology - veterinary, polymerse chain reaction - methods, phylogeny, genome viral - genetics, sequence analysis, DNA, swine
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3. Identification of a novel papillomavirus type (MfoiPV1) associated with acrochordon in a stone marten (Martes foina)Urška Kuhar, Diana Žele-Vengušt, Urška Jamnikar Ciglenečki, Gorazd Vengušt, 2021, original scientific article Keywords: papillomavirus, Dyonupapillomavirus, stone marten, Martes foina, NGS, MfoiPV1, Papillomaviridae, genome, viral
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4. Molecular detection of porcine reproductive and respiratory syndrome virus, porcine circovirus 2 and hepatitis E virus in oral fluid compared to their detection in faeces and serumJan Plut, Urška Jamnikar Ciglenečki, Marina Štukelj, 2020, original scientific article Keywords: pig oral fluid, faeces, serum, PRRS, hepatitis E virus, PCV2, porcine reproductive and respiratory syndrome, hepatitis e virus - virology, Circoviridae infections - virology, swine
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5. Identification of novel reassortant mammalian orthoreoviruses from bats in SloveniaTina Mikuletič, Danijela Černe, Peter Hostnik, Nataša Toplak, Simon Koren, Urška Kuhar, Urška Jamnikar Ciglenečki, Denis Kutnjak, Andrej Steyer, 2018, original scientific article Keywords: bats, genome reassortment, mammalian orthoreovirus, whole genome sequencing
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7. Učinkovitost higienskih programov v izbranih enotah vrtcevMaša Štrakl, 2020, master's thesis Keywords: magistrska dela, sanitarno inženirstvo, bakterije, umivanje rok, razkuževanje rok, čiščenje, razkuževanje, vrtci
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8. First molecular detection of Neospora caninum in feces of grey wolf (Canis lupus) and golden jackal (Canis aureus) populations in SloveniaPetra Bandelj, Darja Kušar, Laura Šimenc Kramar, Urška Jamnikar Ciglenečki, Gorazd Vengušt, Diana Žele-Vengušt, 2023, original scientific article Keywords: Neospora, wolves, jackals, real-time polymerase chain reaction, Neospora caninum, definitive hosts, grey wolf, Canis lupus, golden jackal, Canis aureus, real-time PCR, qPCR, digital PCR, dPCR
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9. Prevalence of red panda amdoparvovirus infection in European zoosUrška Kuhar, Oldřich Tomášek, Endre Sós, J. Mede, Marjan Kastelic, Nuša Jež, Martina Petríková, Trine Hammer Jensen, Charels Everett Alex, Urška Jamnikar Ciglenečki, Pavel Kvapil, 2023, original scientific article Keywords: Amdoparvovirus, Red panda, Zoo
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