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1. DNA sampling: a method for probing protein binding at specific loci on bacterial chromosomes
Matej Butala, Steve J. W. Busby, David J. Lee, 2009, original scientific article

Keywords: methods, Escherichia coli, protocols
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2. A method for targeting a specified segment of DNA to a bacterial microorganelle
Jan Otoničar, Maja Hostnik, Maja Grundner, Rok Kostanjšek, Tajda Gredar, Maja Garvas, Zoran Arsov, Zdravko Podlesek, Cene Gostinčar, Jernej Jakše, Steve J. W. Busby, Matej Butala, 2022, original scientific article

Keywords: DNA, physical characterisation, biochemical characterisation
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3. Silencing of DNase colicin E8 gene expression by a complex nucleoprotein assembly ensures timely colicin induction
Simona Kamenšek, Zdravko Podlesek, Matej Butala, Douglas F. Browning, Steve J. W. Busby, Darja Žgur-Bertok, 2015, original scientific article

Keywords: DNA damage, gene expression, nucleases, promoter regions
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4. The bacterial LexA transcriptional repressor
Matej Butala, Darja Žgur-Bertok, Steve J. W. Busby, 2009, review article

Keywords: LexA, transcription factor, DNA damage, SOS response (biology), gene expression, antibiotic resistance
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5. Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response
Matej Butala, Daniel Klose, Vesna Hodnik, Ana Rems, Zdravko Podlesek, Johann P. Klare, Gregor Anderluh, Steve J. W. Busby, Heinz-Jürgen Steinhoff, Darja Žgur-Bertok, 2011, original scientific article

Keywords: DNA repair, LexA regulon, induction of gene expression, antibiotic tolerance
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6. Double locking of an Escherichia coli promoter by two repressors prevents premature colicin expression and cell lysis
Matej Butala, Silva Sonjak, Simona Kamenšek, Milan Hodošček, Douglas F. Browning, Darja Žgur-Bertok, Steve J. W. Busby, 2012, original scientific article

Keywords: colicins, DNA damage, induction of gene expression, LexA regulon, transcription factor IscR
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7. The LexA regulatory system
Matej Butala, Darja Žgur-Bertok, Steve J. W. Busby, 2013, independent scientific component part or a chapter in a monograph

Keywords: antibiotic resistance, bacteriophage induction, cell-cycle control, DNA damage, DNA repair, gene activation, induction of gene expression, LexA regulon, transcription responses, virulence factor regulation
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