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1. Ugotavljanje bakterij iz družine Chlamydiaceae pri pticah v Sloveniji
Cvetka Marhold, 2013, doctoral dissertation

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2. Clostridium difficile genotypes other than ribotype 078 that are prevalent among human, animals and environmental isolates
Sandra Janežič, Matjaž Ocepek, Valerija Tkalec, Maja Rupnik, 2012, original scientific article

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3. Implications of cattle trade for the spread and control of infectious diseases in Slovenia
Tanja Knific, Matjaž Ocepek, Andrej Kirbiš, Hartmunt H.K. Lentz, 2020, original scientific article

Keywords: Mycobacterium avium subsp. paratuberculosis, paratuberculosis, epidemiology, cattle
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4. Helicobacter labacensis sp. nov., Helicobacter mehlei sp. nov., and Helicobacter vulpis sp. nov., isolated from gastric mucosa of red foxes (Vulpes vulpes)
Igor Gruntar, Bojan Papić, Mateja Pate, Urška Zajc, Matjaž Ocepek, Darja Kušar, 2020, original scientific article

Keywords: Helicobacter, novel species, red fox, Vulpes vulpes, gastric mucosa
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5. Distribution of Salmonella Enteritidis genotypes among selected broiler flocks in Bosnia and Herzegovina
Matjaž Ocepek, Jasna Mićunović, Darja Kušar, Sead Hadžiabdić, Emina Rešidbegović, 2015, original scientific article

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6. High genetic similarity of ciprofloxacin-resistant Campylobacter jejuni in central Europe
Jasna Kovač, Neža Čadež, Beatrix Stessl, Kerstin Stingl, Igor Gruntar, Matjaž Ocepek, Marija Trkov, Martin Wagner, Sonja Smole Možina, 2015, original scientific article

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7. Verjetnost kontaminacije rdečega mesa iz zraka z bakterijami vrste Listeria monocytogenes v klavnični industriji
Edvard Kenda, 2012, doctoral dissertation

Keywords: živilska mikrobiologija, mesna industrija, klavnice, rdeče meso, mesni izdelki, kontaminacija, patogeni mikroorganizmi, bakterije, Listeria monocytogenes, aerobna kontaminacija, disertacije
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8. Evaluation of combined high-efficiency DNA extraction and real-time PCR for detection of Mycobacterium avium subsp. paratuberculosis in subclinically infected dairy cattle
Katarina Logar, Rok Kopinč, Petra Bandelj, Jože Starič, Aleš Lapanje, Matjaž Ocepek, 2012, original scientific article

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9. The first report of Mycobacterium celatum isolation from domestic pig (Sus scrofa domestica) and Roe deer (Capreolus capreolus) and an overview of human infections in Slovenia
Mateja Pate, Marija Žolnir-Dovč, Darja Kušar, Branko Krt, Silvio Špičić, Željko Cvetnić, Matjaž Ocepek, 2011, original scientific article

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10. Evaluation of newly developed high-efficiency DNA extraction method for real-time PCR detection of Mycobacterium avium subsp. paratuberculosis from faeces in comparison with other diagnostic methods
Katarina Logar, Rok Kopinč, Petra Bandelj, Jože Starič, Branko Krt, Aleš Lapanje, Matjaž Ocepek, 2012, published scientific conference contribution

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