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1. Ugotavljanje bakterij iz družine Chlamydiaceae pri pticah v Sloveniji
Cvetka Marhold, 2013, doctoral dissertation

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2. Implications of cattle trade for the spread and control of infectious diseases in Slovenia
Tanja Knific, Matjaž Ocepek, Andrej Kirbiš, Hartmunt H.K. Lentz, 2020, original scientific article

Keywords: Mycobacterium avium subsp. paratuberculosis, paratuberculosis, epidemiology, cattle
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3. Helicobacter labacensis sp. nov., Helicobacter mehlei sp. nov., and Helicobacter vulpis sp. nov., isolated from gastric mucosa of red foxes (Vulpes vulpes)
Igor Gruntar, Bojan Papić, Mateja Pate, Urška Zajc, Matjaž Ocepek, Darja Kušar, 2020, original scientific article

Keywords: Helicobacter, novel species, red fox, Vulpes vulpes, gastric mucosa
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4. Novel TaqMan PCR assay for the quantification of Paenibacillus larvae spores in bee-related samples
Darja Kušar, Bojan Papić, Urška Zajc, Irena Zdovc, Majda Golob, Lucija Žvokelj, Tanja Knific, Jana Avberšek, Matjaž Ocepek, Metka Pislak Ocepek, 2021, original scientific article

Keywords: American foulbrood (AFB), Paenibacillus larvae, real-time or quantitative PCR (qPCR), digital PCR (dPCR), plate counting, spore germination rate, honey, hive debris, Polymerase Chain Reaction
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5. Genomic insights into Salmonella Choleraesuis var. Kunzendorf outbreak reveal possible interspecies transmission
Bojan Papić, Darja Kušar, Jasna Mićunović, Špela Vidrih, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2021, original scientific article

Keywords: Salmonella Choleraesuis, whole-genome sequencing, domestic pig, wild boar, outbreak investigation
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6. Sledenje izvora in širjenja okužbe piščančjega mesa z bakterijami Campylobacter jejuni vzdolž proizvodne verige z metodo MLST (sekvenciranjem multilokusnih zaporedij)
Eva Sobočan Zajc, 2014, master's thesis

Keywords: Campylobacter jejuni, tipizacija, MLST, flaA, mPCR, dPCR, sekvenciranje, klonski kompleks, sekvenčni tip, kampilobakterioze, piščančje meso
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7. Environmental contamination with SARS-CoV-2 in hospital COVID department
Urška Rozman, Lea Knez, Goran Novak, Jernej Golob, Anita Pulko, Mojca Cimerman, Matjaž Ocepek, Urška Kuhar, Sonja Šostar-Turk, 2022, original scientific article

Keywords: SARS-CoV-2, hospital environment, antigenic tests, real-time RT-PCR, virus isolation
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8. High genetic similarity of ciprofloxacin-resistant Campylobacter jejuni in central Europe
Jasna Kovač, Neža Čadež, Beatrix Stessl, Kerstin Stingl, Igor Gruntar, Matjaž Ocepek, Marija Trkov, Martin Wagner, Sonja Smole Možina, 2015, original scientific article

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9. Kvantifikacija črevesnih bakterijskih skupin iz biopsijskih vzorcev pacientov s kolorektalnim rakom z verižno reakcijo s polimerazo
Urša Košir, 2015, master's thesis

Keywords: kolorektalni rak, črevesna mikrobiota, mikrobne združbe, filogenetske skupine, 16S rRNK, molekularne tehnike, qPCR
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10. Overview of Slovenian control programmes for cattle diseases not regulated by the European Union
Jaka Jakob Hodnik, Tanja Knific, Jože Starič, Ivan Toplak, Matjaž Ocepek, Peter Hostnik, Jožica Ježek, 2021, review article

Keywords: cattle diseases, disease control, legislation, cattle trade, disease surveillance, infectious diseases
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