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2. Quantitative risk assessment of exposure to Mycobacterium avium subsp. paratuberculosis (MAP) via different types of milk for the Slovenian consumerTanja Knific, Matjaž Ocepek, Andrej Kirbiš, Branko Krt, Jasna Prezelj, Jörn Martin Gethmann, 2022, original scientific article Keywords: Mycobacterium avium subsp. paratuberculosis, MAP, quantitative risk assessment, Monte Carlo simulations, food safety, milk, cattle diseases, risk assessment, methods, paratuberculosis, transmission, epidemiology, prevalence, microbiology
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3. Modeling paratuberculosis transmission in a small dairy herd typical of Slovenia suggests that different models should be used to study disease spread in herds of different sizesTanja Knific, Andrej Kirbiš, Jörn Martin Gethmann, Jasna Prezelj, Branko Krt, Matjaž Ocepek, 2022, original scientific article Keywords: Mycobacterium avium subsp. paratuberculosis, MAP, compartmental model, small dairy herds, within-herd transmission, cattle diseases, paratuberculosis, transmission, epidemiology
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5. Helicobacter labacensis sp. nov., Helicobacter mehlei sp. nov., and Helicobacter vulpis sp. nov., isolated from gastric mucosa of red foxes (Vulpes vulpes)Igor Gruntar, Bojan Papić, Mateja Pate, Urška Zajc, Matjaž Ocepek, Darja Kušar, 2020, original scientific article Keywords: Helicobacter, novel species, red fox, Vulpes vulpes, gastric mucosa
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6. Novel TaqMan PCR assay for the quantification of Paenibacillus larvae spores in bee-related samplesDarja Kušar, Bojan Papić, Urška Zajc, Irena Zdovc, Majda Golob, Lucija Žvokelj, Tanja Knific, Jana Avberšek, Matjaž Ocepek, Metka Pislak, 2021, original scientific article Keywords: American foulbrood (AFB), Paenibacillus larvae, real-time or quantitative PCR (qPCR), digital PCR (dPCR), plate counting, spore germination rate, honey, hive debris, Polymerase Chain Reaction
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7. Genomic insights into Salmonella Choleraesuis var. Kunzendorf outbreak reveal possible interspecies transmissionBojan Papić, Darja Kušar, Jasna Mićunović, Špela Vidrih, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2021, original scientific article Keywords: Salmonella Choleraesuis, whole-genome sequencing, domestic pig, wild boar, outbreak investigation
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8. Sledenje izvora in širjenja okužbe piščančjega mesa z bakterijami Campylobacter jejuni vzdolž proizvodne verige z metodo MLST (sekvenciranjem multilokusnih zaporedij)Eva Sobočan Zajc, 2014, master's thesis Keywords: Campylobacter jejuni, tipizacija, MLST, flaA, mPCR, dPCR, sekvenciranje, klonski kompleks, sekvenčni tip, kampilobakterioze, piščančje meso
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9. Environmental contamination with SARS-CoV-2 in hospital COVID departmentUrška Rozman, Lea Knez, Goran Novak, Jernej Golob, Anita Pulko, Mojca Cimerman, Matjaž Ocepek, Urška Kuhar, Sonja Šostar-Turk, 2022, original scientific article Keywords: SARS-CoV-2, hospital environment, antigenic tests, real-time RT-PCR, virus isolation
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10. Clonal spread of pESI-positive multidrug-resistant ST32 Salmonella enterica serovar Infantis isolates among broilers and humans in SloveniaBojan Papić, Darja Kušar, Jasna Mićunović, Mateja Pirš, Matjaž Ocepek, Jana Avberšek, 2022, original scientific article Keywords: Salmonella Infantis, ST32, pESI, multidrug resistance, broilers, humans
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