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1. Ugotavljanje bakterij iz družine Chlamydiaceae pri pticah v Sloveniji
Cvetka Marhold, 2013, doctoral dissertation

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2. Implications of cattle trade for the spread and control of infectious diseases in Slovenia
Tanja Knific, Matjaž Ocepek, Andrej Kirbiš, Hartmunt H.K. Lentz, 2020, original scientific article

Keywords: Mycobacterium avium subsp. paratuberculosis, paratuberculosis, epidemiology, cattle
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3. Helicobacter labacensis sp. nov., Helicobacter mehlei sp. nov., and Helicobacter vulpis sp. nov., isolated from gastric mucosa of red foxes (Vulpes vulpes)
Igor Gruntar, Bojan Papić, Mateja Pate, Urška Zajc, Matjaž Ocepek, Darja Kušar, 2020, original scientific article

Keywords: Helicobacter, novel species, red fox, Vulpes vulpes, gastric mucosa
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4. Sledenje izvora in širjenja okužbe piščančjega mesa z bakterijami Campylobacter jejuni vzdolž proizvodne verige z metodo MLST (sekvenciranjem multilokusnih zaporedij)
Eva Sobočan Zajc, 2014, master's thesis

Keywords: Campylobacter jejuni, tipizacija, MLST, flaA, mPCR, dPCR, sekvenciranje, klonski kompleks, sekvenčni tip, kampilobakterioze, piščančje meso
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5. High genetic similarity of ciprofloxacin-resistant Campylobacter jejuni in central Europe
Jasna Kovač, Neža Čadež, Beatrix Stessl, Kerstin Stingl, Igor Gruntar, Matjaž Ocepek, Marija Trkov, Martin Wagner, Sonja Smole Možina, 2015, original scientific article

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6. Kvantifikacija črevesnih bakterijskih skupin iz biopsijskih vzorcev pacientov s kolorektalnim rakom z verižno reakcijo s polimerazo
Urša Košir, 2015, master's thesis

Keywords: kolorektalni rak, črevesna mikrobiota, mikrobne združbe, filogenetske skupine, 16S rRNK, molekularne tehnike, qPCR
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7. Verjetnost kontaminacije rdečega mesa iz zraka z bakterijami vrste Listeria monocytogenes v klavnični industriji
Edvard Kenda, 2012, doctoral dissertation

Keywords: živilska mikrobiologija, mesna industrija, klavnice, rdeče meso, mesni izdelki, kontaminacija, patogeni mikroorganizmi, bakterije, Listeria monocytogenes, aerobna kontaminacija, disertacije
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8. Salmonella Infantis in broiler flocks in Slovenia
Mateja Pate, Jasna Mićunović, Majda Golob, Lene Karine Vestby, Matjaž Ocepek, 2019, original scientific article

Keywords: Poultry diseases-drug therapy, Salmonella infections, animal-microbiology, biofilms-drug effects, chickens-microbiology, drug resistance, multiple, bacterial, feces-microbiology, genetic variation, microbial sensitivity tests, serogroup, Slovenia
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9. Mycobacteria in aquarium fish
Mateja Pate, Andrej Ovca, Vlasta Jenčič, Marija Žolnir-Dovč, Matjaž Ocepek, 2019, original scientific article

Keywords: fish tank granuloma, fish tuberculosis, mycobacteria, questionnaire, zoonosis
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10. Management of a Coxiella burnetii-infected sheep flock after an outbreak of Q fever in humans
Jana Avberšek, Mateja Pate, Andrej Škibin, Matjaž Ocepek, Branko Krt, 2019, original scientific article

Keywords: Coxiella burnetii, Q fever - prevention and control, sheep, vaccination, serology
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