1. Dissection of dynamic transcriptome landscape of leaf, bract, and lupulin gland in hop (Humulus lupulus L.)Ajay Kumar Mishra, Tomáš Kocábek, Vishnu Sukumari Nath, Praveen Awasthi, Ankita Shrestha, Uday Kumar Killi, Jernej Jakše, Josef Patzak, Karel Krofta, Jaroslav Matoušek, 2020, original scientific article Keywords: bitter acids, prenylflavonoids, terpenoids, trichome, Humulus lupulus, lupulin glands, RNA sequencing
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2. Revisiting the role of transcription factors in coordinating the defense response against Citrus bark cracking viroid infection in commercial hop (Humulus lupulus L.)Vishnu Sukumari Nath, Ajay Kumar Mishra, Atul Kumar, Jaroslav Matoušek, Jernej Jakše, 2019, original scientific article Keywords: transcriptional reprogramming, viroid pathogenesis, hop stunt disease, management
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3. Evaluation of disease severity and global transcriptome response induced by Citrus bark cracking viroid, Hop latent viroid, and their co-infection in hop (Humulus lupulus L.)Nataša Štajner, Sebastjan Radišek, Ajay Kumar Mishra, Vishnu Sukumari Nath, Jaroslav Matoušek, Jernej Jakše, 2019, original scientific article Keywords: Citrus bark cracking viroid, co-infection, differentially expressed genes, Humulus lupulus, Hop latent viroid, transcriptome profiling
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4. Mapping the gene expression spectrum of mediator subunits in response to viroid infection in plantsVishnu Sukumari Nath, Ankita Shrestha, Praveen Awasthi, Ajay Kumar Mishra, Tomáš Kocábek, Jaroslav Matoušek, Andrej Sečnik, Jernej Jakše, Sebastjan Radišek, Vipin Hallan, 2020, original scientific article Keywords: differential expression, hop, mediator complex, Nicotiana benthamiana, Nicotiana tabacum, pathogen, quantitative reverse transcription PCR, viroid
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5. Integrated proteo-transcriptomic analyses reveal insights into regulation of pollen development stages and dynamics of cellular response to apple fruit crinkle viroid (AFCVd)-infection in Nicotiana tabacumAnkita Shrestha, Ajay Kumar Mishra, Jaroslav Matoušek, Lenka Steinbachová, David Potěšil, Vishnu Sukumari Nath, Praveen Awasthi, Tomáš Kocábek, Jernej Jakše, Lenka Záveská Drábková, Zbyněk Zdráhal, David Honys, Gerhard Steger, 2020, original scientific article Keywords: AFCVd propagation and eradication, viroid replication, viroid degradation, Nicotiana tabacum, male gametophyte, proteome, RNA sequencing, RT qPCR
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6. Discovery of microRNA-like small RNAs in pathogenic plant fungus Verticillium nonalfalfae using high-throughput sequencing and qPCR and RLM-RACE validationTaja Jeseničnik, Nataša Štajner, Sebastjan Radišek, Ajay Kumar Mishra, Katarina Košmelj, Urban Kunej, Jernej Jakše, 2022, original scientific article Keywords: Verticillium nonalfalfae, RNA interference, microRNA-like RNAs, fungal pathogen, plant-pathogen interactions
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7. Genome-wide transcriptomic analysis reveals insights into the response to Citrus bark cracking viroid (CBCVd) in hop (Humulus lupulus L.)Ajay Kumar Mishra, Atul Kumar, Deepti Mishra, Vishnu Sukumari Nath, Jernej Jakše, Tomáš Kocábek, Uday Kumar Killi, Filis Morina, Jaroslav Matoušek, 2018, original scientific article Keywords: Citrus bark cracking viroid, differentially expressed genes, hop, pathogen, transcriptome analysis, viroids
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