20.500.12556/RUL-145021 Novel identification of the collection of pathogenic fungal species Verticillium with the development of species-specific SSR markers The genus Verticillium is a group of ascomycete fungi that includes several pathogenic plant species. In 2011, a new taxonomic classification, proposed by Inderbitzin and coworkers (2011), re-defined the genus as Verticillium sensu stricto. The objective of our study was the re-classification of the fungal species held in the culture collection in the Slovenian Institute of Hop Research and Brewing in accordance with the newly established taxonomy. With the PCR marker system proposed by Inderbitzin and coworkers in 2011, we re-classified 88 Verticillium isolates out of the 105 samples that are held in the institute’s bank, which were obtained from different geographic locations in Europe, North America, and Japan, and from different host plants, including alfalfa, cotton, hop, olive, potato, and tomato. However, the PCR marker for the V. dahliae identification proved to be less specific, and it resulted in the positive amplification of Gibellulopsis nigrescens, V. isaacii, and V. longisporum. To enable the accurate distinction of the fungi, the SSR and LAMP markers were added to the analyses. The 12 newly identified SSR markers, which were used in simplex PCR reactions or in combination, enabled the accurate identification of all included Verticillium isolates and could potentially be used as biomarkers for rapid and easy species identification. classification LAMP multiplex PCR SSR marker Vericillium glive Verticillium identifikacija klasifikacija SSR markerji PCR true false true Angleški jezik Slovenski jezik Članek v reviji 2023-03-30 09:19:29 2023-03-30 09:19:33 2023-03-31 03:36:29 0000-00-00 00:00:00 2023 0 0 18 str. no. 4, art. 535 Vol. 12 2023 0000-00-00 NiDoloceno NiDoloceno NiDoloceno 0000-00-00 0000-00-00 0000-00-00 577.2 2076-0817 147144451 pathogens-12-00535.pdf pathogens-12-00535.pdf 1 6460E72F84706419A6A0C82B315D260F 022ac07e2f815fc5f0343f3b7e67ec2885e192a5df263360e105fd0b7c64dd05 ba09d2fc-cecb-11ed-a314-00155dcfd717 https://repozitorij.uni-lj.si/Dokument.php?lang=slv&id=167639 https://www.mdpi.com/2076-0817/12/4/535 1 1d66bd86-cecb-11ed-a314-00155dcfd717 https://repozitorij.uni-lj.si/Dokument.php?lang=slv&id=167637 Biotehniška fakulteta 0 0 0