20.500.12556/RUL-144163 OligoPrime an information system for oligonucleotide management With the increasing number of molecular biology techniques, large numbers of oligonucleotides are frequently involved in individual research projects. Thus, a dedicated electronic oligonucleotide management system is expected to provide several benefits such as increased oligonucleotide traceability, facilitated sharing of oligonucleotides between laboratories, and simplified (bulk) ordering of oligonucleotides. Herein, we describe OligoPrime, an information system for oligonucleotide management, which presents a computational support for all steps in an oligonucleotide lifecycle, namely, from its ordering and storage to its application, and disposal. OligoPrime is easy to use since it is accessible via a web browser and does not require any installation from the end user’s perspective. It allows filtering and search of oligonucleotides by various parameters, which include the exact location of an oligonucleotide, its sequence, and availability. The oligonucleotide database behind the system is shared among the researchers working in the same laboratory or research group. Users might have different roles which define the access permissions and range from students to researchers and primary investigators. Furthermore, OligoPrime is easy to manage and install and is based on open-source software solutions. Its code is freely available at https://github.com/OligoPrime. Moreover, an implementation of OligoPrime, which can be used for testing is available at http://oligoprime.xyz/. To our knowledge, OligoPrime is the only software solution dedicated specifically to oligonucleotide management. We strongly believe that it has a large potential to enhance the transparency of use and to simplify the management of oligonucleotides in academic laboratories and research groups. oligonucleotide primer information system management computational support web application oligonukleotid oligonukleotidni začetnik informacijski sistem vodenje računalniška podpora spletna aplikacija true false true Angleški jezik Slovenski jezik Članek v reviji 2023-02-02 10:00:37 2023-02-02 10:00:37 2023-02-03 03:55:07 0000-00-00 00:00:00 2021 0 0 9 str. Vol. 12 2021 0000-00-00 Zaloznikova Objavljeno NiDoloceno 0000-00-00 0000-00-00 0000-00-00 004:577 1179-5972 10.1177/11795972211041983 75739139 11795972211041983.pdf 11795972211041983.pdf 1 0DDF3D0539FE42927AD720F498894631 ae8d8242b8cd160955dfadefd7784a6b08dfd091e02576579de5d272df4bedfe fb093bbc-a2d7-11ed-9c94-00155dcfd717 https://repozitorij.uni-lj.si/Dokument.php?lang=slv&id=166332 https://journals.sagepub.com/doi/10.1177/11795972211041983 0 d5e21cdc-a2d7-11ed-9c94-00155dcfd717 https://repozitorij.uni-lj.si/Dokument.php?lang=slv&id=166331 Fakulteta za računalništvo in informatiko Medicinska fakulteta 0 0 0