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Ocena interakcij med jedrnimi receptorji in izbranimi alkaloidi z metodo in silico
ID Pirnat, Anamarija (Avtor), ID Sollner Dolenc, Marija (Mentor) Več o mentorju... Povezava se odpre v novem oknu

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Izvleček
Alkaloidi so organske spojine, ki vsebujejo vsaj en dušikov atom, običajno vezan v heterociklično strukturo. Kot samo ime pove, imajo alkaloid bazični značaj, čeprav nekateri alkaloidi nimajo bazičnih lastnosti. Prisotni so v naravi, v rastlinah, glivah in živalih. Ljudje smo jim vsakodnevno izpostavljeni preko prehrambne verige, z uporabo zdravil ali drugih virov. Čeprav izkazujejo številne koristne lastnosti, so lahko tudi toksični. Ker se je v zadnjem obdobju povečalo raziskovanje področja motilcev endokrinega sistema, je smiselno raziskati tudi vpliv alkaloidov na delovanje tega sistema. Trenutne raziskave kažejo, da so lahko nekateri alkaloidi potencialni motilci endokrinega sistema. Endocrine Disruptome (ED) je prosto dostopna programska platforma, ki omogoča vrednotenje vezave ligandov na jedrne hormonske receptorje in silico. V magistrski nalogi smo s pomočjo tega prosto dostopnega programa ovrednotili endokrino delovanje 43 izbranih alkaloidov. Izmed številnih pravih alkaloidov smo naključno izbrali predstavnike iz različnih kemijskih skupin teh spojin. Rezultate smo razdelili v tri skupine na podlagi tega, ali jih je program razvrstil kot visoko ali zmerno verjetne motilce endokrinega sistema (v rdeč ali oranžen razred vezave), ali so alkaloidi v strokovnih virih že zabeleženi kot potencialni motilci endokrinega sistema, oziroma v zadnjo skupino, kjer spojine ne sodijo v nobeno od prej omenjenih skupin. Med 43 preučevani alkaloidi je le nikotin že potrjen motilec endokrinega sistema. Program je kar 20 alkaloidov razvrstil v rdeč ali oranžen razred vezave za vsaj en receptor, najpogosteje so to bili androgeni receptorji. Največ interakcij je predvidel z androgenimi, estrogenskimi in tiroidnimi receptorji. Kinolizidinski alkaloidi so se izkazali kot kemijska skupina z največjo afiniteto do jedrnih hormonskih receptorjev. Ker je eksperimentalnih podatkov o delovanju naključno izbranih alkaloidov na endokrini sistem izredno malo, napovedne moči programa ne moramo ovrednotiti. Za potrditev pridobljenih rezultatov bi bile potrebne dodatne, bolj kompleksne metode in vitro in in vivo. Program Endocrine Disruptome je za napovedovanje endokrinega delovanja sprejet s strani regulatornih inštitucij (Evropska agencija za kemikalije, Evropska agencija za varno hrano) in je primerno programsko orodje za odkrivanje potencialnih motilcev endokrinega sistema, seveda v kombinaciji z ostalimi testiranji in vitro in in vivo.

Jezik:Slovenski jezik
Ključne besede:alkaloidi, Endocrine Disruptome, endokrini sistem, jedrni hormonski receptorji, kemični motilci endokrinega sistema, metode in silico
Vrsta gradiva:Magistrsko delo/naloga
Organizacija:FFA - Fakulteta za farmacijo
Leto izida:2025
PID:20.500.12556/RUL-173000 Povezava se odpre v novem oknu
Datum objave v RUL:12.09.2025
Število ogledov:156
Število prenosov:24
Metapodatki:XML DC-XML DC-RDF
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Sekundarni jezik

Jezik:Angleški jezik
Naslov:In silico assessment of selected alkaloids´ interactions with nuclear receptors
Izvleček:
Alkaloids are organic compounds that contain at least one nitrogen atom, usually bound within a heterocyclic structure. As the name suggests, alkaloids generally exhibit basic properties, although some alkaloids do not possess basic characteristics. They occur naturally in plants, fungi, and animals. Humans are exposed to them daily through the food chain, the use of medications, or other sources. While alkaloids display numerous beneficial properties, they can also be toxic. Given the recent increase in research into endocrine-disrupting chemicals, it is reasonable to explore the potential effects of alkaloids on the endocrine system. Current studies indicate that some alkaloids may act as potential endocrine disruptors. Endocrine Disruptome (ED) is a freely accessible software platform that enables in silico evaluation of ligand binding to nuclear hormone receptors. In this master's thesis, we used this publicly available program to assess the endocrine activity of 43 selected alkaloids. From among many true alkaloids, representatives from different chemical groups were randomly selected. The results were divided into three groups based on whether the program classified them as highly or moderately likely endocrine disruptors (placed in the red or orange binding class), whether they are already recognized in the literature as potential endocrine disruptors, or whether the compounds did not fall into either of the aforementioned categories. Among the 43 studied alkaloids, only nicotine has already been confirmed as an endocrine disruptor. The program classified as many as 20 alkaloids into the red or orange binding class for at least one receptor, most commonly androgen receptors. The most predicted interactions were with androgen, estrogen, and thyroid receptors. Quinolizidine alkaloids emerged as the chemical group with the highest affinity for nuclear hormone receptors. Since experimental data on the effects of randomly selected alkaloids on the endocrine system are extremely scarce, the predictive power of the program cannot be fully evaluated. Additional, more complex in vitro and in vivo methods would be required to confirm the obtained results. The Endocrine Disruptome program is accepted by regulatory agencies (European Chemicals Agency, European Food Safety Authority) for the prediction of endocrine activity and serves as an appropriate software tool for identifying potential endocrine disruptors, particularly when used in combination with other in vitro and in vivo testing methods.

Ključne besede:alkaloids, Endocrine Disruptome, endocrine system, nuclear receptors, endocrine disrupting chemicals, in silico methods

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