Discovery of substituted oxadiazoles as a novel scaffold for DNA gyrase inhibitors

Jakopin, Žiga (avtor), Ilaš, Janez (avtor), Barančokova, Michaela (avtor), Brvar, Matjaž (avtor), Tammela, Päivi (avtor), Sollner Dolenc, Marija (avtor), Tomašič, Tihomir (avtor), Kikelj, Danijel (avtor)

DNA gyrase and topoisomerase IV are type IIa topoisomerases that are essential bacterial enzymes required to oversee the topological state of DNA during transcription and replication processes. Their ATPase domains, GyrB and ParE, respectively, are recognized as viable targets for small molecule inhibitors, however, no synthetic or natural product GyrB/ParE inhibitors have so far reached the clinic for use as novel antibacterial agents, except for novobiocin which was withdrawn from the market. In the present study, a series of substituted oxadiazoles have been designed and synthesized as potential DNA gyrase inhibitors. Structure-based optimization resulted in the identification of compound 35, displaying an IC50 of 1.2 mM for Escherichia coli DNA gyrase, while also exhibiting a balanced low micromolar inhibition of E. coli topoisomerase IV and of the respective Staphylococcus aureus homologues. The most promising inhibitors identified from each series were ultimately evaluated against selected Grampositive and Gram-negative bacterial strains, of which compound 35 inhibited Enterococcus faecalis with a MIC90 of 75 mM. OuDNA gyrase and topoisomerase IV are type IIa topoisomerases that are essential bacterial enzymes required to oversee the topological state of DNA during transcription and replication processes. Their ATPase domains, GyrB and ParE, respectively, are recognized as viable targets for small molecule inhibitors, however, no synthetic or natural product GyrB/ParE inhibitors have so far reached the clinic for use as novel antibacterial agents, except for novobiocin which was withdrawn from the market. In the present study, a series of substituted oxadiazoles have been designed and synthesized as potential DNA gyrase inhibitors. Structure-based optimization resulted in the identification of compound 35, displaying an IC50 of 1.2 mM for Escherichia coli DNA gyrase, while also exhibiting a balanced low micromolar inhibition of E. coli topoisomerase IV and of the respective Staphylococcus aureus homologues. The most promising inhibitors identified from each series were ultimately evaluated against selected Grampositive and Gram-negative bacterial strains, of which compound 35 inhibited Enterococcus faecalis with a MIC90 of 75 mM. Our study thus provides further insight into the structural requirements of substituted oxadiazoles for dual inhibition of DNA gyrase and topoisomerase IVr study thus provides further insight into the structural requirements of substituted oxadiazoles for dual inhibition of DNA gyrase and topoisomerase IV.

• Jezik: Angleški jezik
• Ključne besede: 1, 2, 4-oxadiazoles, DNA gyrase inhibition, topoisomerase IV inhibition, antibacterial screening, computer-aided drug design
• Vrsta gradiva: Znanstveno delo
• Tipologija: 1.01 - Izvirni znanstveni članek
• Organizacija: FFA - Fakulteta za farmacijo
• Status publikacije: Objavljeno
• Različica publikacije: Recenzirani rokopis
• Leto izida: 2017
• Št. strani: Str. 171-184
• Številčenje: Vol. 130
• PID: 20.500.12556/RUL-106640
• UDK: 615.4:54
• ISSN pri članku: 0223-5234
• DOI: 10.1016/j.ejmech.2017.02.046
• COBISS.SI-ID: 4292465
• Datum objave v RUL: 09.03.2019

JAKOPIN, Žiga, ILAŠ, Janez, BARANČOKOVA, Michaela, BRVAR, Matjaž, TAMMELA, Päivi, SOLLNER DOLENC, Marija, TOMAŠIČ, Tihomir in KIKELJ, Danijel, 2017, Discovery of substituted oxadiazoles as a novel scaffold for DNA gyrase inhibitors. European journal of medicinal chemistry [na spletu]. 2017. Vol. 130, p. 171–184. [Dostopano 11 april 2025]. DOI 10.1016/j.ejmech.2017.02.046. Pridobljeno s: https://repozitorij.uni-lj.si/IzpisGradiva.php?lang=slv&id=106640

Gradivo je del revije

• Naslov: European journal of medicinal chemistry
• Skrajšan naslov: Eur. j. med. chem.
• Založnik: Elsevier
• ISSN: 0223-5234
• COBISS.SI-ID: 25429760

Licence

• Licenca: CC BY-NC-ND 4.0, Creative Commons Priznanje avtorstva-Nekomercialno-Brez predelav 4.0 Mednarodna
• Povezava: http://creativecommons.org/licenses/by-nc-nd/4.0/deed.sl
• Opis: Najbolj omejujoča licenca Creative Commons. Uporabniki lahko prenesejo in delijo delo v nekomercialne namene in ga ne smejo uporabiti za nobene druge namene.
• Začetek licenciranja: 09.03.2019

Projekti

• Financer: EC - European Commission
• Program financ.: H2020
• Številka projekta: 642620
• Naslov: Interdisciplinary Training Network for Validation of Gram-Negative Antibacterial Targets
• Akronim: INTEGRATE